1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagattctttttaacatattttccaaatgtaattttatattgacttttaatttttgatatgctatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCAGGCGATGGCTGCTTCTGCCATTGTGGGGGTACCAATTGCCGAGGCCGTG
species | Zea mays |
transcript | GRMZM2G125432_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAAAC ATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|33091982|gb|CF051976.1|CF051976
genomic: AGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGACgtaagattct ... tatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: TTGGCTTGTTTGCTAATCAAGAC ATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|60395411|gb|DN228281.1|DN228281
genomic: TTGGCTTGTTTGCTAATCAAGACgtaagattct ... tatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: AGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGAC ATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCA
genomic: AGAGCAAAGATTGCCAGCTTGCTCACATTGGCTTGTTTGCTAATCAAGACgtaagattct ... tatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCA
attttccaaatgtaattttatattgacttttaatttttgatatgctatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCAGGCGATGGCTGCTTCTGCCATTGTGGGGGTACCAATTGCCGAGGCCGTG
ctatttttc CT-rich tract
taattttatattgact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattctttttaacatattttccaaatgtaattttatattgacttttaatttttgatatgctatttttcagATTGCCGTAGGAGAAGAACTTGCCTATGATTACCGACAAAAGCTTGTAGCAGGCGATGGCTGCTTCTGCCATTGTGGGGGTACCAATTGCCGAGGCCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT