1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atagtaatctatttgcagtgtttctagtttttgcgattctgtaaaatttctacaattgtcttgcaatttgacttggtacttgtatgtccttttcttttagCTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAATTTCCGCCGGATTTTCGTCCAACGG
species | Zea mays |
transcript | GRMZM2G117531_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCTGATGTATACAGGTTACCGTATCTATCCAGTGGCGCTCCTGGATTCG CTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAAEST: gi|5325076|gb|AI783267.1|AI783267
genomic: GGCTGATGTATACAGGTTACCGTATCTATCCAGTGGCGCTCCTGGATTCGgttagttcat ... tttcttttagCTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAA
EST: GGCTGATGTATACAGGTTACCGTATCTATCCAGTGGCGCTCCTGGATTCG CTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAAEST: gi|5846888|gb|AI999971.1|AI999971
genomic: GGCTGATGTATACAGGTTACCGTATCTATCCAGTGGCGCTCCTGGATTCGgttagttcat ... tttcttttagCTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAA
EST: GGCTGATGTATACAGGTTACCGTATCTATCCAGTGGCGCTCCTGGATTCG CTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAAEST: gi|211503769|gb|FL479719.1|FL479719
genomic: GGCTGATGTATACAGGTTACCGTATCTATCCAGTGGCGCTCCTGGATTCGgttagttcat ... tttcttttagCTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAA
EST: CAGTGGCGCTCCTGGATTCG CTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAA
genomic: CAGTGGCGCTCCTGGATTCGgttagttcat ... tttcttttagCTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAA
atttctacaattgtcttgcaatttgacttggtacttgtatgtccttttcttttagCTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAATTTCCGCCGGATTTTCGTCCAACGG
atttgac putative branch site (score: 50)
tatgtccttttctttt putative PPT
ttttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagtaatctatttgcagtgtttctagtttttgcgattctgtaaaatttctacaattgtcttgcaatttgacttggtacttgtatgtccttttcttttagCTTTGCTTGAAGCTGCCAGGAAGATCAATTTCCAAGATGTACTAAGTAGAATTTCCGCCGGATTTTCGTCCAACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - atttgca
- - - - - - - - - tgtttct
- - - - - - - - - - - - - gtttttg
- - - - - - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacttg