1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...accacaaacctcatgtataattataattaacccctggataagtaaaactcaggctcgtgcaatggttggtcacatgcatgtacttgttgatatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTACTCAGTCATTTAGTTACCGGGTGGTTATGGCTCAG
species | Zea mays |
transcript | GRMZM2G117531_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG GGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTAEST: gi|71771385|gb|DR969322.1|DR969322
genomic: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAGgtactgtacc ... tatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTA
EST: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG GGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTAEST: gi|149001509|gb|EE038815.2|EE038815
genomic: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAGgtactgtacc ... tatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTA
EST: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG GGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTAEST: gi|148964993|gb|EC906065.2|EC906065
genomic: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAGgtactgtacc ... tatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTA
EST: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG GGTCACCTGATGCACGACGTGCGACTATTGTGTTCCTTCACGGAGCTCCTAEST: gi|148947866|gb|EC893357.2|EC893357
genomic: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAGgtactgtacc ... tatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTA
EST: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG GGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTA
genomic: CGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAGgtactgtacc ... tatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTA
aactcaggctcgtgcaatggttggtcacatgcatgtacttgttgatatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTACTCAGTCATTTAGTTACCGGGTGGTTATGGCTCAG
tgttgat putative branch site (score: 31)
ttgatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accacaaacctcatgtataattataattaacccctggataagtaaaactcaggctcgtgcaatggttggtcacatgcatgtacttgttgatatattgtagGGTCACCTGATGCACGACGTGGGACTATTGTGTTCCTTCACGGAGCTCCTACTCAGTCATTTAGTTACCGGGTGGTTATGGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
-ccacaaa
- - - - - -catgtat
- - - - - - - - - - - - - - - -ccctgga
- - - - - - - - - - - - - - - - - - - - - - aaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttga