1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ataaaattttttaagatctaaacacgaattttttttccgaaaaatggctaaaatacaaaaaattcggcagactaaaagtgactcgacttgttgcgtccagAGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG
species | Zea mays |
transcript | GRMZM2G117531_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTAC AGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAGEST: gi|71771385|gb|DR969322.1|DR969322
genomic: AGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTACgtaatgcctt ... ttgcgtccagAGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAG
EST: AGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTAC AGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAGEST: gi|149001509|gb|EE038815.2|EE038815
genomic: AGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTACgtaatgcctt ... ttgcgtccagAGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAG
EST: AGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTAC AGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAGEST: gi|148964993|gb|EC906065.2|EC906065
genomic: AGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTACgtaatgcctt ... ttgcgtccagAGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAG
EST: AGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTAC AGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAGEST: gi|148947866|gb|EC893357.2|EC893357
genomic: AGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTACgtaatgcctt ... ttgcgtccagAGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAG
EST: AGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTAC AGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAG
genomic: AGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTACgtaatgcctt ... ttgcgtccagAGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAG
ggctaaaatacaaaaaattcggcagactaaaagtgactcgacttgttgcgtccagAGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG
gactaaa putative branch site (score: 2)
aaatacaaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaaattttttaagatctaaacacgaattttttttccgaaaaatggctaaaatacaaaaaattcggcagactaaaagtgactcgacttgttgcgtccagAGGATCGAAGACAAGGGCAGGGAATACGGCTCGTATGTCAGAGCAGGAGAGTTTCGATGGTTCGTCAGGGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - aacacga
- - - - - - - - - - - - - - - - - - - gaaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat