1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gctggataattcaggccttcatcctgattttggaaattgctgctattgttttgtctgattagatttctcctgtggtgacttttatatttttaccctccagGTTGAACGCTCCTGATAACAGCAGGTGCGGGCTGCTGCAGCGACAGAAATCTGGGATTTCAGAAGATGGTAGACTCTCTCGCAGAAGCAGCTGTAGTTCT
species | Zea mays |
transcript | GRMZM2G116700_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCATACCAGTCTTCGACTCCCTCCATACATCAAGGTTTCAACAGACAAG GTTGAACGCTCCTGATAACAGCAGGTGCGGGCTGCTGCAGCGACAGAAATCEST: gi|113704153|gb|EE681657.1|EE681657
genomic: CTCATACCAGTCTTCGACTCCCTCCATACATCAAGGTTTCAACAGACAAGgtatattcaa ... taccctccagGTTGAACGCTCCTGATAACAGCAGGTGCGGGCTGCTGCAGCGACAGAAATC
EST: CTCATACCAGTCTTCGACTCCCTCCATACATCAAGGTTTCAACAGACAAG GTTGAACGCTCCTGATAACAGCAGGTGCGGGCTGCTGCAGCGACAGAAATC
genomic: CTCATACCAGTCTTCGACTCCCTCCATACATCAAGGTTTCAACAGACAAGgtatattcaa ... taccctccagGTTGAACGCTCCTGATAACAGCAGGTGCGGGCTGCTGCAGCGACAGAAATC
ttgttttgtctgattagatttctcctgtggtgacttttatatttttaccctccagGTTGAACGCTCCTGATAACAGCAGGTGCGGGCTGCTGCAGCGACAGAAATCTGGGATTTCAGAAGATGGTAGACTCTCTCGCAGAAGCAGCTGTAGTTCT
gtctgat putative branch site (score: 81)
tatttttaccctcc putative PPT
tgacttttatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctggataattcaggccttcatcctgattttggaaattgctgctattgttttgtctgattagatttctcctgtggtgacttttatatttttaccctccagGTTGAACGCTCCTGATAACAGCAGGTGCGGGCTGCTGCAGCGACAGAAATCTGGGATTTCAGAAGATGGTAGACTCTCTCGCAGAAGCAGCTGTAGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
gctggat
- - - - - - - gccttca
- - - - - - - - - - - -ctgattt
- - - - - - - - - - - - - - - - - - - gctgcta
- - - - - - - - - - - - - - - - - - - - - - - tgttttg