1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaatcaataaaatgatctaaggtttggttttttaattttttgagtatttaatccatacaaacaatgaactaaaacccttcttacctgtcatgatctgcagGTACAGTGGGCTGGCTTTGATAAACTTGAATGTGGGGGTGGCTTGCTACGGCAAGTTTTGTTGCTGGCTTATAAATCTGGTTTCCAAGTGTGGGATGTGG
species | Zea mays |
transcript | GRMZM2G116700_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTGGTCAACTCGATGGCCAGCCACGAGGAGGATGCAAGTCGTGACCAG GTACAGTGGGCTGGCTTTGATAAACTTGAATGTGGGGGTGGCTTGCTACGGEST: gi|148949543|gb|EC895007.2|EC895007
genomic: CGCTGGTCAACTCGATGGCCAGCCACGAGGAGGATGCAAGTCGTGACCAGgttcgttaac ... tgatctgcagGTACAGTGGGCTGGCTTTGATAAACTTGAATGTGGGGGTGGCTTGCTACGG
EST: CGCTGGTCAACTCGATGGCCAGCCACGAGGAGGATGCAAGTCGTGACCAG GTACAGTGGGCTGGCTTTGATAAACTTGAATGTGGGGGTGGCTTGCTACGG
genomic: CGCTGGTCAACTCGATGGCCAGCCACGAGGAGGATGCAAGTCGTGACCAGgttcgttaac ... tgatctgcagGTACAGTGGGCTGGCTTTGATAAACTTGAATGTGGGGGTGGCTTGCTACGG
atttaatccatacaaacaatgaactaaaacccttcttacctgtcatgatctgcagGTACAGTGGGCTGGCTTTGATAAACTTGAATGTGGGGGTGGCTTGCTACGGCAAGTTTTGTTGCTGGCTTATAAATCTGGTTTCCAAGTGTGGGATGTGG
ttcttac putative branch site (score: 223)
aactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatcaataaaatgatctaaggtttggttttttaattttttgagtatttaatccatacaaacaatgaactaaaacccttcttacctgtcatgatctgcagGTACAGTGGGCTGGCTTTGATAAACTTGAATGTGGGGGTGGCTTGCTACGGCAAGTTTTGTTGCTGGCTTATAAATCTGGTTTCCAAGTGTGGGATGTGG
- - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -catacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa