1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctatggtttggttggaaaagcatctaaataaaatcaaccttatctaatgtttatccttctttgtgaattatcgaatgtttacatacattgttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTGGCAACCCAAAGATGTTTGAGGCAAATGTGAAAAGAGCCATGACCGGAG
species | Zea mays |
transcript | GRMZM2G115939_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|32846744|gb|CD986425.1|CD986425
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|26455341|gb|CA826924.1|CA826924
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|32801453|gb|CD953689.1|CD953689
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACTGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCEST: gi|8516672|gb|BE123397.1|BE123397
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATC
EST: CTGTTCTCAGCATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|211060519|gb|FL179753.1|FL179753
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|21330709|gb|BQ486090.1|BQ486090
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|32847082|gb|CD986763.1|CD986763
genomic: CTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|211291785|gb|FL131028.1|FL131028
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|78077789|gb|DV506218.1|DV506218
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCCGEST: gi|211320075|gb|FL327296.1|FL327296
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCC-G
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTYTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCEST: gi|211153912|gb|FL325451.1|FL325451
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCC
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAAC-AAACGACGAGGATCCTTTGAAACACGAAGCTGCATGCTGTCCTCCGEST: gi|8516401|gb|BE123127.1|BE123127
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCA-GCTGTCCTCCG
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|50326390|gb|CO521516.1|CO521516
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCAEST: gi|211407585|gb|FL360124.1|FL360124
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCA
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|211291786|gb|FL131029.1|FL131029
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAEST: gi|78077788|gb|DV506217.1|DV506217
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGA
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|211378878|gb|FL474247.1|FL474247
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|91875000|gb|EB404957.1|EB404957
genomic: CCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|211441546|gb|FL398417.1|FL398417
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: TCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|211291784|gb|FL131027.1|FL131027
genomic: TCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|8516280|gb|BE123007.1|BE123007
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: CTGTTCTCAACATCAGCACCGTTATTTATGGCCTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTEST: gi|211090799|gb|FL312054.1|FL312054
genomic: CTGTTCTCAACATCAACACCGTTATTTATGGCCTGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGT
EST: GTTCTCAACATCAACACCCGTTATTTATGGCCNTGAATCTTCTTTTTACG CAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGGCTGTCCTCCG
genomic: GTTCTCAACATCAACACC-GTTATTTATGGCC-TGAATCTTCTTTTTACGgtatttcagc ... ttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAG-CTGTCCTCCG
aatgtttatccttctttgtgaattatcgaatgtttacatacattgttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTGGCAACCCAAAGATGTTTGAGGCAAATGTGAAAAGAGCCATGACCGGAG
atctaat putative branch site (score: 3)
tgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatggtttggttggaaaagcatctaaataaaatcaaccttatctaatgtttatccttctttgtgaattatcgaatgtttacatacattgttacctgcagCAACCAAACGACGAGGATCCTTTGAACCACGAAGCTGCAGCTGTCCTCCGTGGCAACCCAAAGATGTTTGAGGCAAATGTGAAAAGAGCCATGACCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -ttggttg
- - - - - - - gaaaagca
- - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acataca