1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttagtgtatccaaaaatagtttagaagttattgctatgatcagatgccagctttgtgagttttcttagccttccccaatttaatatactgtcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGATCCTCCGAAGGTCAAATGCAAGACCAAG
species | Zea mays |
transcript | GRMZM2G115939_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCTGATGAATTTTGAGACCACCATCCGACCTGATGAAGGATATTACAT GGGCGGCACTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|9028438|gb|BE238583.1|BE238583
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGCTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211398788|gb|FL318386.1|FL318386
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTEST: gi|32915063|gb|CF019875.1|CF019875
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGT
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211259767|gb|FL311710.1|FL311710
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211291785|gb|FL131028.1|FL131028
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|78077789|gb|DV506218.1|DV506218
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211320075|gb|FL327296.1|FL327296
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211153912|gb|FL325451.1|FL325451
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|50326390|gb|CO521516.1|CO521516
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211407585|gb|FL360124.1|FL360124
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211291786|gb|FL131029.1|FL131029
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|78077788|gb|DV506217.1|DV506217
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|91875000|gb|EB404957.1|EB404957
genomic: GATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211291784|gb|FL131027.1|FL131027
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|19770077|gb|BQ034798.1|BQ034798
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGACCACCATCCGACCTGATGAAGGATATTACAT GGGCGGCACTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211472923|gb|FL342170.1|FL342170
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211118985|gb|FL350356.1|FL350356
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|71442439|gb|DR823489.1|DR823489
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGACCACCATCCGACCTGATGAAGGATATTACAT GGGCGGCACTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGAEST: gi|211090799|gb|FL312054.1|FL312054
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
EST: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACAT GGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
genomic: GATCTGATGAATTTTGAGATCACCATCCGACCTGATGAAGGATATTACATgtaagtgcca ... tcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGA
gccagctttgtgagttttcttagccttccccaatttaatatactgtcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGATCCTCCGAAGGTCAAATGCAAGACCAAG
atttaat putative branch site (score: 4)
ctgtctttttt putative PPT
aatttaatatactgtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtgtatccaaaaatagtttagaagttattgctatgatcagatgccagctttgtgagttttcttagccttccccaatttaatatactgtcttttttagGGGAGGCGCTTTCGTTTTCACCTTTCAAGTGTCCCCATCTTATCCTCATGATCCTCCGAAGGTCAAATGCAAGACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - tgtatcc
- - - - - -aaaaata
- - - - - - - - - - - - - - - -tgctatg
- - - - - - - - - - - - - - - - - - - - - - tgccagc