1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgcctctcttagtctgctggtgtaactctgaaaatatgtcgtcggtttgaacgatgcaaaacaacagtaatccgcatgtactttagtaagttg...
species | Zea mays |
transcript | GRMZM2G115939_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|211373002|gb|FL342998.1|FL342998
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAWAGATGAGGCAGCEST: gi|9028438|gb|BE238583.1|BE238583
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|211398788|gb|FL318386.1|FL318386
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAAGCCGTTCCACGCTCCTCCAGCGAGCTCCGTGCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|32915063|gb|CF019875.1|CF019875
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTGCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|211259767|gb|FL311710.1|FL311710
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|78077789|gb|DV506218.1|DV506218
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|24462527|gb|BM660058.1|BM660058
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTGCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAANAAAGATGAGGCAGCEST: gi|211350032|gb|FL354315.1|FL354315
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAWAGATGAGGCAGCEST: gi|211320075|gb|FL327296.1|FL327296
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|211153912|gb|FL325451.1|FL325451
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|50326390|gb|CO521516.1|CO521516
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|211407585|gb|FL360124.1|FL360124
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|211505256|gb|FL326165.1|FL326165
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAAGCCGTTCCACGCTCCTCCAGCGAGCTCCGTGCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|19770077|gb|BQ034798.1|BQ034798
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: CGCTCCTCTAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGAAGAGGCAGCEST: gi|211472923|gb|FL342170.1|FL342170
genomic: CGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAWAGATGAGGCAGCEST: gi|211118985|gb|FL350356.1|FL350356
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCEST: gi|211090799|gb|FL312054.1|FL312054
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
EST: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAG AAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
genomic: AAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgc ... ttttgtgcagAAAGATGATTAATCTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCTTAGTGCAAGCAAGGAGGCCGTTCCACGCTCCTCCAGCGAGCTCCGTTCTGAAGCGGCAAGgtaaacctgcctctcttagtctgctggtgtaactctgaaaatatgtcgtcggtttgaacgatgcaaaacaacagtaatccgcatgtactttagtaagttg
- - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaacaa