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gtaagatattctaatcttttgcgtatgctgttaactctgtttagctggaaataacaaagacaacattaaataccacgatttatttagataatatcagaacacatgcgattatcctgaatgagctagtattgtaaattgtagttctacttcaaccaaatcaatttatggttctaatcatgctaactttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGATACCTGAATTTCTGAAAACTAATGAATGTCAGAAGGTGGACTGCTTGCT
species | Zea mays |
transcript | GRMZM2G112672_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|31360067|gb|CD444424.1|CD444424
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|5525520|gb|AI861413.1|AI861413
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|22545746|gb|BU098105.1|BU098105
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: ACATGACACTACAATATCTCA- GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|60354409|gb|DN221382.1|DN221382
genomic: ACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|8930139|gb|BE224783.1|BE224783
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|211284965|gb|FL440139.1|FL440139
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|4610024|gb|AI600863.1|AI600863
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|6194508|gb|AW146612.1|AW146612
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|6445548|gb|AW179511.1|AW179511
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|78021323|gb|DV489710.1|DV489710
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|5770153|gb|AI973327.1|AI973327
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|9952360|gb|BE638943.1|BE638943
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|5650045|gb|AI920405.1|AI920405
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGAEST: gi|211483288|gb|FL326631.1|FL326631
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTHCATTCTCAGGTCGATGAEST: gi|5901062|gb|AW042162.1|AW042162
genomic: GTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
EST: AGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAA GGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
genomic: AGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatatt ... ctttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGA
tagttctacttcaaccaaatcaatttatggttctaatcatgctaactttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGATACCTGAATTTCTGAAAACTAATGAATGTCAGAAGGTGGACTGCTTGCT
tgctaac putative branch site (score: 251)
aaatcaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatattctaatcttttgcgtatgctgttaactctgtttagctggaaataacaaagacaacattaaataccacgatttatttagataatatcagaacacatgcgattatcctgaatgagctagtattgtaaattgtagttctacttcaaccaaatcaatttatggttctaatcatgctaactttgtgcagGGACATCACCACTACATTTCCGAGCTTTGTCTTCCATTCTCAGGTCGATGATACCTGAATTTCTGAAAACTAATGAATGTCAGAAGGTGGACTGCTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA