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...atcagcatttctattattcttattaaagccagttaactactaaaaagtgaattgattttaatgcattctgtatctaataattttcttgttttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAGATGAGGTCATAGAGAGCATCATTGATAAG
species | Zea mays |
transcript | GRMZM2G112672_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|211265415|gb|FL346370.1|FL346370
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|31360067|gb|CD444424.1|CD444424
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTACAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|5525520|gb|AI861413.1|AI861413
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: ATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACNCTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|60354409|gb|DN221382.1|DN221382
genomic: ATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|8930139|gb|BE224783.1|BE224783
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|6194508|gb|AW146612.1|AW146612
genomic: CTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|78021323|gb|DV489710.1|DV489710
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|211071789|gb|FK958795.1|FK958795
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|5770153|gb|AI973327.1|AI973327
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CTCAAGC-ACAAGG-TTCATTGAAAG-CAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|9952360|gb|BE638943.1|BE638943
genomic: CTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|211483288|gb|FL326631.1|FL326631
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAEST: gi|211071790|gb|FK958796.1|FK958796
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
EST: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAG GTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
genomic: CATTCCAACTTTATGACCTCAAGCAACAAGGCTTCATTGAAAGACAGGAGgtatttaact ... ttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTA
agtgaattgattttaatgcattctgtatctaataattttcttgttttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAGATGAGGTCATAGAGAGCATCATTGATAAG
atctaat putative branch site (score: 159)
ttttcttgttttgtt putative PPT
tatctaataattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagcatttctattattcttattaaagccagttaactactaaaaagtgaattgattttaatgcattctgtatctaataattttcttgttttgttattagGTAAAGCAAATGGTTGTTGCTACACTTGCGGAGTCAGGAATGAATCTTTTAGATGAGGTCATAGAGAGCATCATTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
atcagca
- - - - - - - - - - - - - - - - - - - actaaaaa
- - - - - - - - - - - - - - - - - - - - - - - -tgaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattc