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gtttgtgggtgattgctgctgctttctttcttttcttctcttaggaaaatgaatacaactttcttgctttatgtatgtacacaatacacatacaccatacacatgatcgtgatgagtaatctgggttgtggcgctcttgtcctggcatcctgcagGAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTGCTGATCGG
species | Zea mays |
transcript | GRMZM2G112672_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAG GAGGAGTTTCAGTTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTEST: gi|60354409|gb|DN221382.1|DN221382
genomic: TGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGgtttgtgggt ... catcctgcagGAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTT
EST: TGCTGTGATTGATGATGGGCTGATCAACAAG GAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTEST: gi|6194508|gb|AW146612.1|AW146612
genomic: TGCTGTGATTGATGATGGGCTGATCAACAAGgtttgtgggt ... catcctgcagGAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTT
EST: TGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAG GAGGAGTTTCAGTTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTEST: gi|211071789|gb|FK958795.1|FK958795
genomic: TGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGgtttgtgggt ... catcctgcagGAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTT
EST: TGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAG GAGGAGTTTCAGTTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTEST: gi|9952360|gb|BE638943.1|BE638943
genomic: TGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGgtttgtgggt ... catcctgcagGAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTT
EST: CTGTGATTGATGATGGGCTGATCAAC-AG GAGGAGTTTCAGTTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTEST: gi|211071790|gb|FK958796.1|FK958796
genomic: CTGTGATTGATGATGGGCTGATCAACAAGgtttgtgggt ... catcctgcagGAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTT
EST: TGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAG GAGGAGTTTCAGTTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTEST: gi|5325037|gb|AI783228.1|AI783228
genomic: TGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGgtttgtgggt ... catcctgcagGAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTT
EST: TGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAG GAGGAGTTTCAGTTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTT
genomic: TGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGgtttgtgggt ... catcctgcagGAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgggtgattgctgctgctttctttcttttcttctcttaggaaaatgaatacaactttcttgctttatgtatgtacacaatacacatacaccatacacatgatcgtgatgagtaatctgggttgtggcgctcttgtcctggcatcctgcagGAGGAGTTTCAGCTGGCGCTGTTCAAGACTAATAAGAAGGAAAGTTTGTTTGCTGATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT