1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcctcaataccaatgtgcaggtgcaccatttggttattctttgcatgttcccaaattataatttgatttctttcaacagTTCTTCACCTGCCCGGCGCAGTGCTAGTCCTCCCAAGAGCCCACCGCCACAGAGGAGCCCCACTCCTGAAAAGCATGCCAATGGAAAAGATTCACCTCTG
species | Zea mays |
transcript | GRMZM2G110143_T05 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCAAGAGTAGAAGCAGGAGCAGGAGTAGAAGCCGCTCATACCACAG TTCTTCACCTGCCCGGCGCAGTGCTAGTCCTCCCAAGAGCCCACCGCCACAEST: gi|149070638|gb|EE159049.2|EE159049
genomic: AGAAGCAAGAGTAGAAGCAGGAGCAGGAGTAGAAGCCGCTCATACCACAGgtgcctcaat ... ctttcaacagTTCTTCACCTGCCCGGCGCAGTGCTAGTCCTCCCAAGAGCCCACCGCCACA
EST: GATGTTAAGCGCAAGAGCAGAAGCAAGAGTAAAAGCAGGAGCAGGAGTAGAAGCCGCTCATACCCCAGEST: gi|149107883|gb|EE292243.2|EE292243
genomic: AGAAGCAAGAGTAGAAGCAGGAGCAGGAGTAGAAGCCGCTCATACCACAGgtgcctcaat ... ctttcaacagT
EST: GATGTTAAGCGCAAGAGCAGAAGCAAGAGTAGAAGCAGGAGCAGGAGTAGAAGCCGCTCATACCACAG
genomic: AGAAGCAAGAGTAGAAGCAGGAGCAGGAGTAGAAGCCGCTCATACCACAGgtgcctcaat ... ctttcaacagT
accatttggttattctttgcatgttcccaaattataatttgatttctttcaacagTTCTTCACCTGCCCGGCGCAGTGCTAGTCCTCCCAAGAGCCCACCGCCACAGAGGAGCCCCACTCCTGAAAAGCATGCCAATGGAAAAGATTCACCTCTG
atttgat putative branch site (score: 93)
tttctttc CT-rich tract
aaattataatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctcaataccaatgtgcaggtgcaccatttggttattctttgcatgttcccaaattataatttgatttctttcaacagTTCTTCACCTGCCCGGCGCAGTGCTAGTCCTCCCAAGAGCCCACCGCCACAGAGGAGCCCCACTCCTGAAAAGCATGCCAATGGAAAAGATTCACCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG