1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCACAAAGGAAGGGTCAAAGAGGGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactttagttccttccacattatgtccagcattactttaaatcatcttttatggtaacccccctatatatacatatatgtgctctggtaagtaac...
species | Zea mays |
transcript | GRMZM2G110143_T05 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|8401368|gb|BE057002.1|BE057002
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG ACACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|32846542|gb|CD986223.1|CD986223
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGGGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|33100333|gb|CF060293.1|CF060293
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: GGGGTTGAGAAATCAAGAGCCAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAGEST: gi|149070638|gb|EE159049.2|EE159049
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
EST: AAAGGAAGGGTCAAAGAGGGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGEST: gi|149107883|gb|EE292243.2|EE292243
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagG
EST: AAAGGAAGGGTCAAAGAGGGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGEST: gi|32835620|gb|CD975298.1|CD975298
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagG
EST: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAG GCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
genomic: GGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactt ... ttttaactagGCACAGAGACAGAGATGATAGAAGGCGAAGTCGCAGCAGGAGCAGGAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACAAAGGAAGGGTCAAAGAGGGGGTTGAGAAATCAAGAGACAGGTCAAGGAGCCGTAGTCCAAGGCCAAGgtgaagactttagttccttccacattatgtccagcattactttaaatcatcttttatggtaacccccctatatatacatatatgtgctctggtaagtaac
- - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccct