1 5' 3' | 2 5' 3' | 3 5' 3' |
...agttctgaataactgtgaaaaaaggatattataatttatacatgtaaaatgtgaagtttcttgagtcttagctcacccaatttttttttccaattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTTCCAAAGGAACTGTTCTCAAGAGAGGGATCGAAAAATCACGAATTGATC
species | Zea mays |
transcript | GRMZM2G106412_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|14202196|gb|BG835873.1|BG835873
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTTGGA-TTEST: gi|60399238|gb|DN232052.1|DN232052
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTT-GGAATT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|71448106|gb|DR829156.1|DR829156
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|83278183|gb|DV942191.1|DV942191
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGTTTTGGAATTTEST: gi|87151655|gb|DY396444.1|DY396444
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|211285140|gb|FL449083.1|FL449083
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|71762470|gb|DR960407.1|DR960407
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|71315771|gb|DR794522.1|DR794522
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTTGGAACTEST: gi|148953733|gb|EC899099.2|EC899099
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTT-GGAATT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|78117881|gb|DV536268.1|DV536268
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|88758083|gb|DY542224.1|DY542224
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTTGGA-TTEST: gi|76912229|gb|DV164624.1|DV164624
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTT-GGAATT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|113598156|gb|DW767750.1|DW767750
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGEST: gi|18168756|gb|BM338596.1|BM338596
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAG
EST: GCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|148953734|gb|EC899100.2|EC899100
genomic: GCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTEST: gi|33092519|gb|CF052513.1|CF052513
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCT
EST: CTTCTGATGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|78117882|gb|DV536269.1|DV536269
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGTCAAGCACACGGCTTTGGAATTTEST: gi|78120538|gb|DV538922.1|DV538922
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTEST: gi|211170553|gb|FL456917.1|FL456917
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
EST: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAG GTACTGCAAAGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
genomic: CTTCTGGTGGACAGCAGCAAGGCAAGAGCTCTACAGTTTCTGATCTTGAGgtatgttttg ... caattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTT
aaaatgtgaagtttcttgagtcttagctcacccaatttttttttccaattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTTCCAAAGGAACTGTTCTCAAGAGAGGGATCGAAAAATCACGAATTGATC
agctcac putative branch site (score: 40)
cccaatttttttttcc CT-rich tract
aatttttttttccaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttctgaataactgtgaaaaaaggatattataatttatacatgtaaaatgtgaagtttcttgagtcttagctcacccaatttttttttccaattgttagGTACTGCAATGCTTAGGAGAGCACTTGGCCAAGCACACGGCTTTGGAATTTTCCAAAGGAACTGTTCTCAAGAGAGGGATCGAAAAATCACGAATTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- ttctgaa
- - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - -atacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcttg