Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGCGGGTGGCACCCAGGGTGCTCTTCCTCGTCCGCGACGCCGCGGGCTACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctcccacccaaaaccctaacctaacgttccaacgcacgtagcatccgctcactggctttttgccgctggatgtttctggtag

Basic information

species Zea mays
transcript GRMZM2G106412_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19436497|gb|BM952907.1|BM952907
EST:     CCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: CCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211377810|gb|FL205678.1|FL205678
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211372475|gb|FL205645.1|FL205645
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|78120539|gb|DV538923.1|DV538923
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211369823|gb|FL205632.1|FL205632
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211372483|gb|FL205653.1|FL205653
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375153|gb|FL205671.1|FL205671
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211372481|gb|FL205651.1|FL205651
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211369827|gb|FL205636.1|FL205636
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375149|gb|FL205667.1|FL205667
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211367174|gb|FL205627.1|FL205627
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|14202196|gb|BG835873.1|BG835873
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211367171|gb|FL205624.1|FL205624
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211369825|gb|FL205634.1|FL205634
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375150|gb|FL205668.1|FL205668
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|71448106|gb|DR829156.1|DR829156
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211377806|gb|FL205674.1|FL205674
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375140|gb|FL205658.1|FL205658
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211369819|gb|FL205628.1|FL205628
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375146|gb|FL205664.1|FL205664
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211372477|gb|FL205647.1|FL205647
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|91052057|gb|EB162475.1|EB162475
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375148|gb|FL205666.1|FL205666
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211372486|gb|FL205656.1|FL205656
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375145|gb|FL205663.1|FL205663
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|21843156|gb|BQ703737.1|BQ703737
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211377815|gb|FL205683.1|FL205683
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|76288703|gb|DV028271.1|DV028271
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCCACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211372482|gb|FL205652.1|FL205652
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211377807|gb|FL205675.1|FL205675
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|71315771|gb|DR794522.1|DR794522
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211377811|gb|FL205679.1|FL205679
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|26557938|gb|CA830173.1|CA830173
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375144|gb|FL205662.1|FL205662
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211369833|gb|FL205642.1|FL205642
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211367173|gb|FL205626.1|FL205626
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211372485|gb|FL205655.1|FL205655
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375142|gb|FL205660.1|FL205660
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211369831|gb|FL205640.1|FL205640
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|88758083|gb|DY542224.1|DY542224
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211369822|gb|FL205631.1|FL205631
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGANA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375141|gb|FL205659.1|FL205659
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211372484|gb|FL205654.1|FL205654
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211367170|gb|FL205623.1|FL205623
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211377809|gb|FL205677.1|FL205677
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|148953734|gb|EC899100.2|EC899100
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211377814|gb|FL205682.1|FL205682
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211369820|gb|FL205629.1|FL205629
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211367169|gb|FL205622.1|FL205622
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375152|gb|FL205670.1|FL205670
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211369829|gb|FL205638.1|FL205638
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|78117882|gb|DV536269.1|DV536269
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211369826|gb|FL205635.1|FL205635
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375151|gb|FL205669.1|FL205669
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211372487|gb|FL205657.1|FL205657
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375147|gb|FL205665.1|FL205665
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211377813|gb|FL205681.1|FL205681
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACGAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375143|gb|FL205661.1|FL205661
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCTACGGACA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
EST: gi|211375154|gb|FL205672.1|FL205672
EST:     TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAG                         GGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA
genomic: TACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 152

CCATGCGGGTGGCACCCAGGGTGCTCTTCCTCGTCCGCGACGCCGCGGGCTACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGAGAAGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCA


Block sizes: 43 (upstream exon), 47 (downstream exon)
Score: 78

CCATGCGGGTGGCACCCAGGGTGCTCTTCCTCGTCCGCGACGCCGCGGGCTACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGAGAAGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCA


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 175

CCATGCGGGTGGCACCCAGGGTGCTCTTCCTCGTCCGCGACGCCGCGGGCTACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGAGAAGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 114

CCATGCGGGTGGCACCCAGGGTGCTCTTCCTCGTCCGCGACGCCGCGGGCTACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctc ... tttctggtagGGAGTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGAGAAGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATGCGGGTGGCACCCAGGGTGCTCTTCCTCGTCCGCGACGCCGCGGGCTACGGCGCTGCCCTCGCCGACGCGCTCCGCCCGCCGCCCGGGCTAACTAGgttttcgctcccacccaaaaccctaacctaacgttccaacgcacgtagcatccgctcactggctttttgccgctggatgtttctggtag

- - - - - - - - - - - - - - - - - - - - - - - - - - CGGCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGCCGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGCCGCCC