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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGAGAAGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccccagaggatttctaaccgttccattgattcgattcgtgctcttccagttgaaatttagcaaaatgaacgaggatttgttgattctgcggtt...

Basic information

species Zea mays
transcript GRMZM2G106412_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19436497|gb|BM952907.1|BM952907
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGGTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211377810|gb|FL205678.1|FL205678
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211372475|gb|FL205645.1|FL205645
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|78120539|gb|DV538923.1|DV538923
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211369823|gb|FL205632.1|FL205632
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211372483|gb|FL205653.1|FL205653
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375153|gb|FL205671.1|FL205671
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211372481|gb|FL205651.1|FL205651
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211369827|gb|FL205636.1|FL205636
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATYMAGCCACCTCTTGCAGCGTGTGT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATA-AGCCACCTCTTGCAGCGTGTGT
EST: gi|211375149|gb|FL205667.1|FL205667
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211367174|gb|FL205627.1|FL205627
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|14202196|gb|BG835873.1|BG835873
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAK                         GWGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211367171|gb|FL205624.1|FL205624
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|60399238|gb|DN232052.1|DN232052
EST:     GAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: GAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211369825|gb|FL205634.1|FL205634
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375150|gb|FL205668.1|FL205668
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|71448106|gb|DR829156.1|DR829156
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCGGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211377806|gb|FL205674.1|FL205674
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375140|gb|FL205658.1|FL205658
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211369819|gb|FL205628.1|FL205628
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTC
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375146|gb|FL205664.1|FL205664
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211372477|gb|FL205647.1|FL205647
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|91052057|gb|EB162475.1|EB162475
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375148|gb|FL205666.1|FL205666
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211372486|gb|FL205656.1|FL205656
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTN
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375145|gb|FL205663.1|FL205663
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|21843156|gb|BQ703737.1|BQ703737
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211377815|gb|FL205683.1|FL205683
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|76288703|gb|DV028271.1|DV028271
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCCGTGGCTCTCCACAG                         GTCACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCCTGTGAT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211372482|gb|FL205652.1|FL205652
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211377807|gb|FL205675.1|FL205675
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGAACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGA-CCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGT
EST: gi|71315771|gb|DR794522.1|DR794522
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211377811|gb|FL205679.1|FL205679
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCABAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCTAGCGTGTGT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGC-AGCGTGTGT
EST: gi|211375144|gb|FL205662.1|FL205662
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211369833|gb|FL205642.1|FL205642
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211367173|gb|FL205626.1|FL205626
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211372485|gb|FL205655.1|FL205655
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375142|gb|FL205660.1|FL205660
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211369831|gb|FL205640.1|FL205640
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|88758083|gb|DY542224.1|DY542224
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211369822|gb|FL205631.1|FL205631
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375141|gb|FL205659.1|FL205659
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211372484|gb|FL205654.1|FL205654
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211367170|gb|FL205623.1|FL205623
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211377809|gb|FL205677.1|FL205677
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|148953734|gb|EC899100.2|EC899100
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211377814|gb|FL205682.1|FL205682
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211369820|gb|FL205629.1|FL205629
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211367169|gb|FL205622.1|FL205622
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375152|gb|FL205670.1|FL205670
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211369829|gb|FL205638.1|FL205638
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|78117882|gb|DV536269.1|DV536269
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211369826|gb|FL205635.1|FL205635
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375151|gb|FL205669.1|FL205669
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211372487|gb|FL205657.1|FL205657
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375147|gb|FL205665.1|FL205665
EST:     AGGCGTGCGC-GAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211377813|gb|FL205681.1|FL205681
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375143|gb|FL205661.1|FL205661
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
EST: gi|211375154|gb|FL205672.1|FL205672
EST:     AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAG                         GTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT
genomic: AGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 138

GTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGAGAAGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTTGTAAATGGGGTCTTGGAACTGATTTCTTCTGAAGCTACCTCCACTGAGC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 150

GTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGAGAAGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTTGTAAATGGGGTCTTGGAACTGATTTCTTCTGAAGCTACCTCCACTGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 159

GTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGAGAAGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTTGTAAATGGGGTCTTGGAACTGATTTCTTCTGAAGCTACCTCCACTGAGC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 147

GTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGAGAAGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccc ... ttattggcagGTGACCATTTTTGTTCTGCCAGACTATAAGCCACCTCTTGCAGCGTGTGTTGTAAATGGGGTCTTGGAACTGATTTCTTCTGAAGCTACCTCCACTGAGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCTCGCCCTTCGAGCTCCCCCTTGGAAAGTACGGCCTCGACGGAGAGAAGGCGTGCGCCGAGCTCCTGAGCTTTTCCGATTCCAGTGGCTCTCCACAGgtaagggccccagaggatttctaaccgttccattgattcgattcgtgctcttccagttgaaatttagcaaaatgaacgaggatttgttgattctgcggtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatgaa