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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAATTCATTTAAAACTGTAGAATCATCGCTCAGGGTTGATGCCCTTGCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactttggggtgtcaattgtcaacatcagaaaagcatacttttgtcttagcacaattgttttgtttgaactttgttatattctaatacgaacaatatcgccagtgcctatgaatgttaattattcttctgaattcacgctcttttgcttgctcag

Basic information

species Zea mays
transcript GRMZM2G105425_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105425_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g54390.1 (Oryza sativa), 5'ss of exon 8
GACCAATTCATTTAAAACTGTAGAATCATCGCTCAGGGTTGATGCCCTTGCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactttggggtgtcaat--tgtcaacatcagaaaagcatacttttgtcttagca-caattgttttgtttgaactttgttatattctaatacgaacaatatcgccagtgc-ctatgaatgttaattattcttc-----------------tgaattca---cgctcttttgcttgctcag
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GACCAAGTCATTTAAAACTGTAGAATCATCACTCAGGGTTGATGCCCTGGGTAGTGCAGGATTTAAAATCTCACGTACAAAGCTTGCTAGCTTGATCAGgtaagatttgtgagctatccatcttcttaggttcattaaaacatctctttatcttaacatcagtggtttactgtgggttatcttcccttctaccttggatggtgccatccacgcattattttgtttaattaccgctcataaagcaattgatatatgtatccaaatctctcttttgtttgtccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60339679|gb|DN206652.1|DN206652
EST:     GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG                         TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
EST: gi|29577131|gb|CB617243.1|CB617243
EST:     GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG                         TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
EST: gi|14243088|gb|BG840722.2|BG840722
EST:     GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG                         TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
EST: gi|76292416|gb|DV031984.1|DV031984
EST:     GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG                         TTCTGGTGATGTTCGTGTGAATTGGACACCCACA-CAAAAAAT
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAAT
EST: gi|78075984|gb|DV504418.1|DV504418
EST:     GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG                         TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
EST: gi|76292415|gb|DV031983.1|DV031983
EST:     GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG                         TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
EST: gi|78090612|gb|DV518986.1|DV518986
EST:     GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG                         TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC