1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagcccgaaggcccatcttatctttcgattttgcctctccgctgacgcttggcccacccgagccagGACGGTATAGCACCGCCATTGCCGTTGCAGCAGCGAGGGATTTGGCGGTGAAAGGAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAA
species | Zea mays |
transcript | GRMZM2G105425_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCACCCGCGCGGAGCCATCGCCGTCCCGTGCTACTTCATCTCGCGAG GACGGTATAGCACCGCCATTGCCGTTGCAGCAGCGAGGGATTTGGCGGTGAEST: gi|67013256|gb|CO442005.1|CO442005
genomic: CCGTCACCCGCGCGGAGCCATCGCCGTCCCGTGCTACTTCATCTCGCGAGgtaagcccga ... cccgagccagGACGGTATAGCACCGCCATTGCCGTTGCAGCAGCGAGGGATTTGGCGGTGA
EST: CCGTCACCCGCGCGGAGCCATCGCCGTCCCGTGCTACTTCATCTCGCGAG GACGGTATAGCACCGCCATTGCCGTCGGAGCAGCGAGGGATTTGGCGGTGAEST: gi|37418380|gb|CF646858.1|CF646858
genomic: CCGTCACCCGCGCGGAGCCATCGCCGTCCCGTGCTACTTCATCTCGCGAGgtaagcccga ... cccgagccagGACGGTATAGCACCGCCATTGCCGTTGCAGCAGCGAGGGATTTGGCGGTGA
EST: CCGTCACCCGCGCGGAGCCATCGCCGTCCCGTGCTACTTCATCTCGCGAG GACGGTGTAGCACCGCCATTGCCGTTGCAGCAGCGAGGGATTTGGCGGTGA
genomic: CCGTCACCCGCGCGGAGCCATCGCCGTCCCGTGCTACTTCATCTCGCGAGgtaagcccga ... cccgagccagGACGGTATAGCACCGCCATTGCCGTTGCAGCAGCGAGGGATTTGGCGGTGA
cccatcttatctttcgattttgcctctccgctgacgcttggcccacccgagccagGACGGTATAGCACCGCCATTGCCGTTGCAGCAGCGAGGGATTTGGCGGTGAAAGGAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAA
cgctgac putative branch site (score: 3)
cccaccc putative PPT
ttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcccgaaggcccatcttatctttcgattttgcctctccgctgacgcttggcccacccgagccagGACGGTATAGCACCGCCATTGCCGTTGCAGCAGCGAGGGATTTGGCGGTGAAAGGAAGCGTGGACAGGAATTCAGCGGAGGAAGTCAGGAACATTCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA