1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgaactttggggtgtcaattgtcaacatcagaaaagcatacttttgtcttagcacaattgttttgtttgaactttgttatattctaatacgaacaatatcgccagtgcctatgaatgttaattattcttctgaattcacgctcttttgcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTACCCTCAAATCTGGAGATGTTGTTTCTGTTAGTGGGATGGGAAGGTTAAAG
species | Zea mays |
transcript | GRMZM2G105425_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTACEST: gi|29577131|gb|CB617243.1|CB617243
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
EST: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTACEST: gi|14243088|gb|BG840722.2|BG840722
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
EST: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTACEST: gi|76292416|gb|DV031984.1|DV031984
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
EST: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG TTCTGGTGATGTTCGTGTGAATTGGACACCCACA-CAAAAAATEST: gi|78075984|gb|DV504418.1|DV504418
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAAT
EST: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTACEST: gi|76292415|gb|DV031983.1|DV031983
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
EST: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTACEST: gi|78090612|gb|DV518986.1|DV518986
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
EST: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAG TTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
genomic: GCCAGTGCAGGATTTAAAATCTCACGCACGAAGCTTGCTAGCTTGATAAGgtatgaactt ... gcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTAC
cagtgcctatgaatgttaattattcttctgaattcacgctcttttgcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTACCCTCAAATCTGGAGATGTTGTTTCTGTTAGTGGGATGGGAAGGTTAAAG
tgttaat putative branch site (score: 3)
ctcttttgcttgctc putative PPT
tatgaatgttaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaactttggggtgtcaattgtcaacatcagaaaagcatacttttgtcttagcacaattgttttgtttgaactttgttatattctaatacgaacaatatcgccagtgcctatgaatgttaattattcttctgaattcacgctcttttgcttgctcagTTCTGGTGATGTTCGTGTGAATTGGACACCAACAACAAAAAATGGAGTTACCCTCAAATCTGGAGATGTTGTTTCTGTTAGTGGGATGGGAAGGTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG