Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATGGGATACAAAATGTTTGGTGAAGCCACACAGTCTCAGTTTACACTGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcgctgtataaaccatttgaaatttcatttctaaaagaagttaagagacctgaacttttggtttgcttagtgcatggaacaatgatatcatgg...

Basic information

species Zea mays
transcript GRMZM2G105192_T05
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105192_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g01100.1 (Oryza sativa), 5'ss of exon 7
GGTGATGGGATACAAAATGTTTGGTGAAGCCACACAGTCTCAGTTTACACTGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg--ctgtataaaccatttg---aaatttcatttcta-aaagaagttaagagacctgaacttttggtttgcttagtgcatggaacaatgatatcatgg
 ||||||||||| || |||||||||||  ||||  | |||||||| || |||||||||||||||||||| |||||||||||| |||| || ||||||||||||||       || | | || |||||     |||| |  | ||| ||  |    ||  |  | |||  ||  ||||||||| | | ||| | ||| ||       
TGTGATGGGATATAAGATGTTTGGTGAGTCCACTGAATCTCAGTTCACGCTGAACTTACCAGAGAATTTGGTGGTTTCAAAGGTTGCTGTCTGGACCACGgtaatgccaaaactctttcaaacatttcctttaattactatgctataaccatacaaatgggtcagaaacttatgtttgcttattacctgggataatcatg------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16926851|gb|BM079919.1|BM079919
EST:     GAACTTACCAGAGAATTTAGTGG-TTCAAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: GAACTTACCAGAGAATTTAGTGGTTTC-AAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|16922011|gb|BM075387.1|BM075387
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|17929411|gb|BM266371.1|BM266371
EST:     GTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: GTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|110220376|gb|EC902274.1|EC902274
EST:     TGAACTTTCCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|18162838|gb|BM332677.1|BM332677
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|29544356|gb|CB604736.1|CB604736
EST:     GAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: GAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|17932564|gb|BM269524.1|BM269524
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|18173199|gb|BM348587.1|BM348587
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|113700925|gb|EE678429.1|EE678429
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|18166790|gb|BM336629.1|BM336629
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|71426677|gb|DR807727.1|DR807727
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|71426676|gb|DR807726.1|DR807726
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|67019146|gb|CO447895.1|CO447895
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|110522223|gb|EE026407.1|EE026407
EST:     CAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: CAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|91876287|gb|EB406244.1|EB406244
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|76288379|gb|DV027947.1|DV027947
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT
EST: gi|71446062|gb|DR827112.1|DR827112
EST:     TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACG                         GTGGCAAATCCAATAACCAAAT
genomic: TGAACTTACCAGAGAATTTAGTGGTTTCAAAGATTGCAGTTTGGACCACGgtaattttcg ... tctattgcagGTGGCAAATCCAATAACCAAAT