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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaaacatgtaatagattttttgtaccatagataagtcctaaaacttctaatgagaattctcttaattgaccattgagcttgtgctatgcttttatgcagGAATAAATGTTCTATGTGGTGTGGGAATCCTATCAACACCTTATGCCATCAAACAAGGCGGGTGGCTTGGACTGGTGATACTCTGTTTATTTGCAATTCT

Basic information

species Zea mays
transcript GRMZM2G105192_T05
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105192_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g01100.2 (Oryza sativa), 3'ss of exon 3
tgaaacatgtaatagattttttgtaccatagataagt--cctaaaacttctaatgagaattctcttaat-tgaccattgagcttgtgctatgcttt-----tatgcagGAATAAATGTTCTATGTGGTGTGGGAATCCTATCAACACCTTATGCCATCAAACAAGGCGGGTGGCTTGGACTGGTGATACTCTGTTTATTTGCAATTCT
         | ||   |||  | |||    || || |  | |||   || |  |   || |  ||   | | |  | | ||  |  |  ||  |||     |||||||||||||||||||| ||||||||||| |||||||| || || |||||||| ||||| || || |||||||||||||||||||| || ||||||||  | ||
--------ttgatctgtttgctttactcaggacaaataacttaacttttttttttccaaatacctacgtattattacttagtctaggggattttttcctattatgcagGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACTTTGCTTATTTGCTGTGCT

upper sequence: GRMZM2G105192_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA20G32260.1 (Glycine max), 3'ss of exon 3
---tgaaacatgtaatagattttttgtaccatagataagtcctaaaacttctaatgagaattctcttaattgaccattgagcttgtgctatgcttttatgcagGAATAAATGTTCTATGTGGTGTGGGAATCCTATCAACACCTTATGCCATCAAACAAGGCGGGTGGCTTGGACTGGTGATACTCTGTTTATTTGCAATTCT
   |  |   ||  |||    ||||     ||      |   |||||||  |        |  |  |  |   || ||    |  |  | ||  ||| || ||| ||||||||||| |||||||| |||||||| || |||||||||||   ||||  ||| || |||||||| ||    ||| |     | ||||||||| |
cattacatagtgggataaggctttttgttgatgatattgatttaaaactatttgaattgctggtgatgctgttccctta--ttcatattttggattt-tgtagGCATAAATGTTCTTTGTGGTGTTGGAATCCTTTCTACACCTTATGCTGCCAAAGTAGGTGGATGGCTTGGGCTTTCTATATTGGTCATTTTTGCAATTAT

upper sequence: GRMZM2G105192_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 3
----tgaaacatgtaatagattttttgtaccatagataagtcctaaaacttctaatgagaattctcttaat--tgaccattgagcttgtgctatgcttttatgcagGAATAAATGTTCTATGTGGTGTGGGAATCCTATCAACACCTTATGCCATCAAACAAGGCGGGTGGCTTGGACTGGTGATACTCTGTTTATTTGCAATTCT
    |     |||  |||    ||||||     | ||   |   |||    ||| |   | | ||  | ||  ||  |  | |  |  |  | ||  ||| || ||| ||||||||||| |||||||| |||||||| || |||||||||||   ||||  ||| || |||||||| ||    ||| |     | ||||||||| |
acattacctaatgggataaggcttttgttgatgatattgatttgaaa----ctatttgaattgctagtgatgctgttccctta-ttcatattttggattt-tgtagGCATAAATGTTCTTTGTGGTGTTGGAATCCTTTCTACACCTTATGCTGCCAAAGTAGGTGGATGGCTTGGGCTTTCTATATTGGTCATTTTTGCAATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaatgagaattctcttaattgaccattgagcttgtgctatgcttttatgcagGAATAAATGTTCTATGTGGTGTGGGAATCCTATCAACACCTTATGCCATCAAACAAGGCGGGTGGCTTGGACTGGTGATACTCTGTTTATTTGCAATTCT
                                          tgctttt  CT-rich tract
               tcttaatt  TA-rich tract