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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACTTAGCTGCCTAAGCTGGAACAAGTACTCAAAAAATATTATTGCAAGCAGTGACTATGAGGGTATAGTAACTGTGTGGGATGTTCAGACCCGTCAGgtatccactctctattcgacagttcattctgcaatggctgtattgtaattcaaactgaggcatatggtttctgtgtattgtgccatgctag

Basic information

species Zea mays
transcript GRMZM2G104920_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 8
TAAACTTAGCTGCCTAAGCTGGAACAAGTACTCAAAAAATATTATTGCAAGCAGTGACTATGAGGGTATAGTAACTGTGTGGGATGTTCAGACCCGTCAGgtatccact-ctctattcgacagttcattctgcaatggctgtattgtaattcaaactgaggcatatggtttctgtgtattgtgccatgctag-
|||||| |||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||| || ||||| |||||||    | |||| ||| |||||||||| ||||     ||| || |  |   ||||  |    ||| | | | ||||||    | |  |   
TAAACTCAGCTGCCTTAGCTGGAACAAGTACTCAAAAAATGTTATAGCAAGCAGCGACTATGAGGGTATAGTAACTGTTTGGGATGTCCAAACCCGCCAGgtatttcttgctctgttccacagttcattttgca-cacttgtgttattttctgaacttggattcatgatatttatgtattcaatcttctttag

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 8
TAAACTTAGCTGCCTAAGCTGGAACAAGTACTCAAAAAATATTATTGCAAGCAGTGACTATGAGGGTATAGTAACTGTGTGGGATGTTCAGACCCGTCAGgtatccactctc-------tattcgacagttcattc-tgcaatggctgtattgtaattcaaactgaggcatatggtttctgtgtattgtgccatgctag
||||||||| ||| | || ||||| ||| |   |||||||   || ||||||||||| ||||| || |||||||| |||||||||||    ||  | |||||    ||| |        |||   |||   ||    |   ||     | |  | | |    | | |   |    ||| | ||||   ||         
TAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACATAGCAAGCAGTGATTATGAAGGAATAGTAACAGTGTGGGATGTAACTACTAGGCAGgtgagtactttacccaaagtatctaacatcgcacctataagatattcatctcatgaattctgcagcgtatttgaatttttatgtaaactgaggcag---