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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccactctctattcgacagttcattctgcaatggctgtattgtaattcaaactgaggcatatggtttctgtgtattgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG

Basic information

species Zea mays
transcript GRMZM2G104920_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 3'ss of exon 8
gtatccact-ctctattcgacagttcattctgcaatggctgtattgtaattcaaactgaggcatatggtttctgtgtattgtgccatgct-agAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
||||    | |||| ||| |||||||||| ||||     ||| || |  |   ||||  |    ||| | | | ||||||    | |  | ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||  | || ||||||||||||||||||||||||||||||
gtatttcttgctctgttccacagttcattttgca-cacttgtgttattttctgaacttggattcatgatatttatgtattcaatcttctttagAGTGTGATGGAGTATGAAGAACATGAAAAGAGAGCATGGAGTGTTGATTTTTCTCGAACAGAACCCTCGATGCTAGTATCTGGGAGTGATGATTGCAAG

upper sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 8
----------------------------------gtatccactctctattcgac--agttcatt-------ctgcaatggc-tgtattgtaattcaaactgaggcatatggttt--------ctgtgtattgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
                                  |||||  |||| |      |  | ||||||        |  |||| | |||  | |  || ||  |    || ||  |||        || |   || | |  |   ||||| | |||||||||||||||||||| ||| | ||||||||||||||||||||  | |||||| | || ||||| |||||||| || ||||| || |||
gtaaatgttgaattcaaatggtcagtttgttcttgtatcagctctttgggtatcttaattcattaatatttttttaatgtcatgtgct-tgcttaaattttctacagattatttactcatggctatcatttttccttttgcagAGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTTGATTTTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG

upper sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA02G43540.2 (Glycine max), 3'ss of exon 8
----------------------------------gtatccactctcta------ttcgacagttcattctgcaatggctgtattgtaattc----aaactgaggcatatggtttctgtgta--------ttgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
                                  |||||   ||| |       |||     || ||  ||   ||  |||  |||  ||     |   |    || ||  |||  |  |         ||   |  ||  ||||| | |||||||||||||||||||| ||| | ||||||||||| || |||||  | |||||  | || ||||| |||||||| || ||||| || |||
gtaaatgttgaattcaaatggtcagtttgttcttgtatcagatctttgggtatcttcattcattaatattgttttgattgtcatgtgcttgcttaagttttctacagattatttacgcatggctatcattttaactttggcagAGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTAGACTTTTCAAGAACAGATCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG

upper sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
----gta-tccactctc--tattcgacagttcattc-tgcaatggctgtattgtaattcaaactgaggcatatggtttctgtgtattgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
    ||| |  || |    |||   |||   ||    |   ||     | |  | | |    | | |   |    ||| | ||||     |   |  ||||| | ||||| ||||||||||| || ||  | || ||||||||||| ||||| || |||||  | |||||||| |||||||| ||||| || ||||||
gtgagtactttacccaaagtatctaacatcgcacctataagatattcatctcatgaattctgcagcgtatttgaatttttatgta---aactgaggcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG

upper sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 8
-----------gtatccactctctattcgacagttcattctgcaatggctgtattgtaattcaaactgaggcatatggtttctgtgtattgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
             |   | |||    ||| ||  | | | |  | | |   |  | || |  | |   |   ||||   | ||    | |||    |   |||||||||||||||||||||||||||| ||  | |||||||||||||||||||| ||||||||  | |||| ||| |||||||| ||||||||||| |||
ggtcctttgaatgaaaaattctgggctcgcca-ctgactatagatttgtccttgtata-tatatatatatatatatatatgctaataaatgttttttatcagAGTGTGATGGAATATGAAGAGCATGAAAAACGGGCATGGAGTGTTGATTTTTCACGCACAGAACCCTCAAGGCTTGTATCTGGCAGTGATGATTGTAAG

upper sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv10s0523g00030.t01 (Vitis vinifera), 3'ss of exon 8
----------------------------------gtatccactctctattcgacagt-tcattctgcaatggctgtattgtaat-tcaaactgag---gcatatggtttctgtgtattgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
                                     | ||   | ||| |   | | |   |||||| |  |  | || |||  ||  | |||    |  | || |  ||  |  |  |    | |||||||||||||||||| || |||||||| ||| |||||||||||||||||||||| ||||| ||  |||||||||| ||||| || |||||||| ||||||
gtagaaattgtatctcttctcttctgttaatctcaattacatcatatatgcacaaatgttgatctgcattcacaattttctaacctcccaatgatttcgagtttgttcactaagattctttttcttctagAGTGTGATGGAATACGAGGAGCATGAAAAGCGAGCATGGAGTGTTGATTTTTCACGCACTGAACCTTCAATGCTCGTATCCGGCAGTGATGACTGCAAG

upper sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S25_325V6.1 (Physcomitrella patens), 3'ss of exon 8
----------------------------------------------------------------------------------------------gtatccactctctattcgacagtt---cattctgcaatggctgtattgtaattcaaactgaggcatatggtttctgtgt-attgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
                                                                                               ||| || ||    ||  | | ||   |    |||   || ||||  ||   || || |     | ||| | |   ||  ||  |    | | ||||||| ||||| ||||| ||||| |||||| | || ||||||||||| ||||| || || ||  |||||||||| || ||||| ||||||||| |||||
gtaggcttgaaaatttggccacttaacataggttcgttgatgatgtccttaattgtggttccagaatgagcgacatatagctttacaatgtgtcatattcattcggatttttaaattttgacgcattgcttcggatgtacggtttgtctaaatatttgacatgttctgcttgccatcatatattaccagAGTGTCATGGAGTATGAGGAGCACGAGAAGCGTGCCTGGAGTGTTGACTTTTCCCGGACGGATCCTTCAATGCTGGTCTCTGGAAGTGATGATGGCAAG

upper sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S135_17V6.1 (Physcomitrella patens), 3'ss of exon 8
------------------------------------------------gtatccactctctattcgacagttcattctgcaatggctgtattgtaattcaaactga--ggcatatggtttctgtgtattgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
                                                 |      | | | |  |   ||   ||      |  ||      ||||      |||  |||    | |||   |  |   |    |   ||||  | ||||||||||| |||||||| ||||| || |||||||| |||||||| || || ||  |  | |||||||| || || ||||||||| |||||
gtctgtccctcattttgatgacgttaagttgaagttaccaccccttgaattatttttttgtgtatgttggtctgtttgaagttcacttctagttaatgtgcggtgaatggccagggatttgacttcaaattttttttacagAGCATTATGGAATATGAGGAGCATGAAAAGAGGGCCTGGAGTGTGGATTTTTCACGAACTGATCCGACCATGCTAGTCTCGGGAAGTGATGATGGCAAG

upper sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S180_148V6.1 (Physcomitrella patens), 3'ss of exon 8
-----------gtatccactctctattcgacagttcattctgcaatggctgtattgtaattcaaactgaggcatatggtttctgtgtattgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
           |      |  ||     || |  | | |  |  |     || |  |  |   |  |  |  || |    |  ||   ||||  | ||| ||||||||||||||||||| || ||||| ||| | || |||||  | ||||||||||| |||||  | |||||||| || ||||| ||||| ||| | |||
atacaagatgagggggagcaatcctagagaaaaattagtacgtgagtaaggtttacttgtgttacttatgttatctt-cctaagtaatttgtttcgtgc-agAGTGTGATGGAATATGAGGAACATGAAAAGCGTGCTTGGAGCATCGATTTTTCTCGTACAGATCCATCAATGCTGGTTTCTGGAAGTGACGATGGAAAG

upper sequence: GRMZM2G104920_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S86_153V6.2 (Physcomitrella patens), 3'ss of exon 8
------------------------------------------------------------------------gtatccactctctattcgacagttcattctgca-----atggctgtattgtaattcaaactgaggcatatggtttctgtgta---ttgtgcc-atgct--agAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
                                                                          | || | |   |  |  |   |   | ||        || |||   |||  |||    | |  ||      ||||  ||    ||||    |||||  ||||  | | ||| |||||||||||||| ||||| ||||||||||| |||||||| || || ||  |  | ||| |||| || || || |||||| |||||
gtttgttttcattatgctcatgccgaagtcatagatatgtcttgatgatgtaaaatccgggctttaggtacctcacccgcccatcacactcccccttgatgtgtgtaggtgtgtctgacgtgtctttctggttcacacaggcaagttctcagttgacttgtaatgatgctgcagAGCATAACGGAGTATGAAGAGCATGAAAAGAGGGCATGGAGTGTGGATTTTTCACGAACTGATCCCACTATGTTAGTCTCGGGAAGCGATGATGGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgtattgtaattcaaactgaggcatatggtttctgtgtattgtgccatgctagAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAG
     attgtaatt  TA-rich tract