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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGACAAGAAGAAAGAGATATAGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATTTCCAGTCTGTGCTAACAACGTTCACTCGATACAGgtgtgtggttatctcttgtgtcgaggtaatatgcttttgtctttgttccattctcactagtctcaccttgtttgttgtcatgtttacttcag

Basic information

species Zea mays
transcript GRMZM2G104920_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 5
GCAGACAAGAAGAAAGAGATATAGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATTTCCAGTCTGTGCTAACAACGTTCACTCGATACAGgtgtg-tggttatctcttgtgtcgag-gtaatatgcttttgtctttgttc---cattctcactagtctcacc------ttgtttgttgtcatgtttacttcag
| || |  || |||||||| |||||  |||| |||| |||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||| ||||| ||||  | || |||| | |  | |  ||   | |||| |  ||    || |    | |  ||| | | || | |      |||||   |||||| | | ||||||
GTAGGCTGGAGGAAAGAGACATAGTAACAATAAATAAAGAAGGTTATCATGCAGGACTTGAGGATTTCCAGTCTGTGCTAACAACATTCACACGATATAGgtccgctgattatttgtcctttttagcacattatgatcatggtagtggttatgcctattcatttggcttatcattcttttgttctctgtcatttatgcttcag

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 5
---GCAGACAAGAAGAAAGAGATATAGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATTTCCAGTCTGTGCTAACAACGTTCACTCGATACAGgtgtgtggttatctcttgtgtcgaggtaatat--gcttttg--tctttgttccattctcactagtctca-ccttgtttgttgtcatgtttacttcag--------------------------------------------------------------------------
     | ||| |||||||| || | |  | | |    | ||||||| ||||||||||||||| |||||||||| ||||||||||| ||||| || ||||| |||| | |   | |   |  | |      | |||  | ||||   ||    ||||  | || ||  |   | |||| | || |||| |  || || |                                                                            
AACATAAACAGGAAGAAAGGGACACAAATTCTA---GTCGAGAAGGTTATCATGCAGGTCTTGAGGATTTCCAATCTGTGCTAACTACGTTTACACGATATAGgtatatatattttgatcattttcttccactatttgtttttagttccacattcctgtttcccttttaggagccttctgtgatgtccttattgctgcttatctgcattacaaattttcggataatttcttcaccctttgttgcttacatcctctatttggttgtttgaattag