Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctttacacctgatgatccatctggcctttccctcaacggtcaatgcccatcacctttcatgaattatagaacactactaatgttttgttgctgacccactgtgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTTTCCCTGATGCATCACGTTGTCATGGGTGATGATCCAGAGGTGAAGGCT

Basic information

species Zea mays
transcript GRMZM2G102231_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102231_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g14580.1 (Oryza sativa), 3'ss of exon 3
gtaagtt--tctttacacctgatg-atccatctg-gcctttccctcaacggtc--aatgcccatcacctttcatgaattatagaacactactaatgttttgttgctgacccactgtgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTTTCCCTGATGCATCACGTTGTCATGGGTGATGATCCAGAGGTGAAGGCT
|||| ||   | | |   |  ||  ||   |||| | |||   | | | | ||   |||  |        |    ||||| |    |  ||   || || |||  |     | |||| ||| ||||||||| ||||| |||||||| |||||||| ||||| ||| ||||||||||| | |||||||| || ||||| ||||| ||||||||||| |||||| ||
gtaatttatccatgatgaccaatatattgctctgagtcttgtgcactatgttcctgatgaaccctgtgcctttcaaattaga----atcacgtttgattcgttctttcttta-tgtggctt-cagATCCCACAAACGTCATTTTGCCCTGAAGACGCAGAACCACAAGGAAATGTTTACACTGATGCACCATGTTGTGATGGGGGATGATCCAGATGTGAAGACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50338090|gb|CO533216.1|CO533216
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|211004136|gb|FL435012.1|FL435012
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|148994252|gb|EE034006.2|EE034006
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|211016904|gb|FL048021.1|FL048021
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|149013687|gb|EE043137.2|EE043137
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|211019679|gb|FL048024.1|FL048024
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|148954135|gb|EC899536.2|EC899536
EST:     TGGTGCATCATTCTTCATGCCAACGGAGTAACAATGACTGTTGCGACAGG                         ATCCCATAAACGCCATTTT
genomic: TGGTGCATCAT-CTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTT
EST: gi|14245028|gb|BG842966.2|BG842966
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|50325634|gb|CO520760.1|CO520760
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|71773066|gb|DR970984.1|DR970984
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTCAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|211016905|gb|FL048022.1|FL048022
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCA
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCA
EST: gi|50338089|gb|CO533215.1|CO533215
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|44901216|gb|CK827761.1|CK827761
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTCGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|211019681|gb|FL048026.1|FL048026
EST:     TTGGTGCATCATCTTCATGCCCACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAA-TGGT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|211016902|gb|FL048019.1|FL048019
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|60346823|gb|DN213796.1|DN213796
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|5649953|gb|AI920313.1|AI920313
EST:     ATCTT-ATGCCAA-GGAG-ACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: ATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
EST: gi|149013686|gb|EE043136.2|EE043136
EST:     TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGG                         ATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT
genomic: TTGGTGCATCATCTTCATGCCAACGGAGTACCAATGGCTGTTGCGACAGGgtaagtttct ... tgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgaattatagaacactactaatgttttgttgctgacccactgtgtcttacagATCCCATAAACGCCATTTTGCACTGAAGACCCAGAATCACCAGGAAATGTTTTCCCTGATGCATCACGTTGTCATGGGTGATGATCCAGAGGTGAAGGCT
     aattatagaa  TA-rich tract