1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCGCGCCTAATGGCATCCTGTGGCGCCGGCGACGCCGCGTCAGCGCAGCCGAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctatcttctccatgttttgtcgatcggggatgtccatgttcttggccccatcaccattccatgggtggagcgcgctgatgatcctcggtctgcggcccggggcgcag
species | Zea mays |
transcript | GRMZM2G102231_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|148994252|gb|EE034006.2|EE034006
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|149013687|gb|EE043137.2|EE043137
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|211019679|gb|FL048024.1|FL048024
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|148954135|gb|EC899536.2|EC899536
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAAAAGATCCTAGCGAGGTACGEST: gi|211016901|gb|FL048018.1|FL048018
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATYTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|211016903|gb|FL048020.1|FL048020
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|71773066|gb|DR970984.1|DR970984
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCGCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|211016905|gb|FL048022.1|FL048022
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|211019680|gb|FL048025.1|FL048025
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|89250658|gb|DY622444.1|DY622444
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGGCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|211019681|gb|FL048026.1|FL048026
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|13237285|gb|BG355299.1|BG355299
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|211016902|gb|FL048019.1|FL048019
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACGEST: gi|60346823|gb|DN213796.1|DN213796
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
EST: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCG ACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
genomic: GAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctat ... cggggcgcagACACGGAGGGCTTCTACACGGAGGTGCAGGAGAAGATCCTAGCGAGGTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCGCCTAATGGCATCCTGTGGCGCCGGCGACGCCGCGTCAGCGCAGCCGAGGGCCAGTATCTCGCACGTCATCTTCGATATGGACGGCCTTCTCCTCGgtatctctatcttctccatgttttgtcgatcggggatgtccatgttcttggccccatcaccattccatgggtggagcgcgctgatgatcctcggtctgcggcccggggcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC