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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTTCTACCGCGGCCGCGCCCCTCACGGCCAGAAGTCCGACTGGATCATGCACGAGTACCGCCTCGAGGACGCCGACGACGCCCAGGGCGGCACCAGCgtacgttgattaccttcttgctctccgatgctctctccactatatatatgtacccggccgtatgcatgtttaatttgcatgagaaatctgagcgaattgttgcctgcatctcagttcttgttagggtttctgtgtgtgctgatcatgcatgcatgtctattaactgtctgttcag

Basic information

species Zea mays
transcript GRMZM2G099144_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099144_T01 (Zea mays), 5'ss of exon 2
lower sequence: 13113.m00212 (Oryza sativa), 5'ss of exon 2
CGTCTTCTACCGCGGCCGCGCCCCTCACGGCCAGAAGTCCGACTGGATCATGCACGAGTACCGCCTCGAGGACGCCGACGACGCCCAGGGCGGCACCAGCgtacgttgattaccttct-tgctctccgatgctctctccactatatat-atgtacccggccgtatgcatgtttaatttgcatgagaaatctgagcgaattgttgcctgcatctcagttcttgttagggtttctgtgtgtgctgatcatgcatgcatgtctattaactgtctgttcag
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||   | | |||||||| | |   || || |  | ||||||      |||   | |  || | |    | ||   | | | | ||    |    ||  | |     |   ||| | |                                                                          
CGTCTTCTACCGCGGCCGCGCCCCCCACGGCCAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGGACGCCGACGACTCCCAGTCTGCCTCCAGCgtaagctcgctagctccccttctctcc----tcctccagagtggattttaaactctcgagtggacgtacgtcccctcgttatttgtatgtcaattaaatgggta-------------------------------------------------------------------------

upper sequence: GRMZM2G099144_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
CGTCTTCTACCGCGGCCGCGCCCCTCACGGCCAGAAGTCCGACTGGATCATGCACGAGTACCGCCTCGAGGACGCCGACGACGCCCAGGGCGGCACCAGCgtacgttgattaccttcttgctctccgatgctctctccactatatatatgtacccggccgtatgcatgtttaatttgcatgagaaatctgagcgaattgttgcctgcatctcagttcttgttagggtttctgtgtgtgctgatcatgcatgcatgtctattaactgtctgttcag
 || ||||||   ||||| || ||||| ||||||||| ||||||||||||||||||||| ||| || || |||| | || | ||     ||||   |   |||||| |    | |||    | ||| |    | |  |||  | |   ||| |||   || ||   ||||  |||   |  ||||| ||   |     | |||   ||  |                                                                
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgc---cgttccacatttccaac---cccctcacagtgttcgtgt-ccctttcg-atcagtgttgcatt---accagaaagcttgcctcggagatgctcccagat----------------------------------------------------------------

upper sequence: GRMZM2G099144_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ22020 (Selaginella moellendorffii), 5'ss of exon 2
CGTCTTCTACCGCGGCCGCGCCCCTCACGGCCAGAAGTCCGACTGGATCATGCACGAGTACCGCCTCGAGGACGCCGACGACGCCCAGGGCGGCACCAGCgtacgttgattaccttcttgctctccgatgctctctccactatatatatgtacccggccgtatgcatgtttaatttgcatgagaaatctgagcgaattgttgcctgcatctcagttcttgttagggtttctgtgtgtgctgatcatgcatgcatgtctattaactgtctgttcag
    |||||| | ||  | || ||  |||| |||||| ||||||||||||||||||||||| | |||||||| | |  |  |  |   ||| ||| || |  | ||  |  | | ||| |  ||  |  ||| | | |  | ||||     ||||     | |   || ||   |||  |  |||||                                                                                        
---TTTCTACAGAGGGAGAGCTCCAAACGGGCAGAAGACCGACTGGATCATGCACGAGTACAGGCTCGAGGAGGACATCAGCAGCAGTGGCAGCAACAACA-ATgt--aagatcctctcgtacttggcagcttttttc-ttctata-----accctcttatttttttggtt---ttggctctgaaatgcag------------------------------------------------------------------------------------