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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtgcttgggcatgttacgttcatggcttcatccttcatgcatggcgattcagttacatgcacgcagcttgttgtttagttgtttgtcttagcttgttcctgtggcttcctgcacagcacggtaatactcattacatcatgctcatccacttgcatcgatcggtgcagAGAGGTGCCGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCCAGGACGAACCGCGCCACCAC

Basic information

species Zea mays
transcript GRMZM2G099144_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099144_T01 (Zea mays), 3'ss of exon 1
lower sequence: 13113.m00212 (Oryza sativa), 3'ss of exon 1
gtatagtgcttgggcatgttacgttcatggcttcatccttcatgcatggcgattcagttacatgcacgcagcttgttgtttagttgtttgtcttagcttgttcctgtggcttcctgcacagcacggtaatactcattacatcatgctcatccacttgcatcgatcg-gtgcagAGAGGTGCCGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCCAGGACGAACCGCGCCACCAC
                                                                      |   |   | ||  |  || || |    |   |      | || ||||  ||| ||  ||     | ||     | |   ||| |||   ||   | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
---------------------------------------------------------------------ggtcggagatgtaaatcattttcattatctaagctctctccatcatgcat-gcatggccatggaggtgacg--ggggttg-ccatttgttgcgtgtgtgtgcagAGAGGTGCAGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCGAGGACGAACCGCGCCACGAC

upper sequence: GRMZM2G099144_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT4G10350.1 (Arabidopsis thaliana), 3'ss of exon 1
gtatagtgcttgggcatgttacgttcatggcttcatccttcatgcatggcgattcagttacatgcacgcagcttgttgtttagttgtttgtcttagcttgttcctgtggcttcctgcacagcacggtaatactcattacatcatgctcatccacttgcatcgatcggtgcagAGAGGTGCCGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCCAGGACGAACCGCGCCACCAC
                                                          || ||  |   |  |   | | ||  |   | | |  || ||     ||   ||  |  |||   |  ||||    ||   |||            ||  ||   | ||   |||||| |||  ||| || ||  | || || ||||| |||||||||||||||||||||||| | || || ||||||||||| ||||| ||||| || ||   
----------------------------------------------------------tatatatatatatatatatatatatatagatatatatgcatgaaaa-gttcattgttatacaattctctaatttgtatgttatc-----------tttttattttttgga--agAGAGATGCAAGATAGGATCAACACCACAAAACGAATGGTACTTCTTCAGCCACAAGGACAGGAAATATCCGACGGGGTCAAGGACCAACCGTGCTACTCA

upper sequence: GRMZM2G099144_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv18s0089g01120.t01 (Vitis vinifera), 3'ss of exon 1
gtatagtgcttgggcatgttacgttcatggcttcatccttcatgcatggcgattcagttacatgcacgcagcttgttgtttagttgtttgtcttagcttgttcctgtggcttcctgcacagcacggtaatactcattacatcatgctcatccacttgcatcgatcggtgcagAGAGGTGCCGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCCAGGACGAACCGCGCCACCAC
                                                           |||  ||  ||  |   |  |   ||  ||| ||   ||| |     ||  ||  |     | | | |   ||| | |  ||             |||  |  ||   ||||||||| ||  |||| |||||  | || || || ||||||||||||||||||||||||||  | ||||| || || ||||| ||||| ||  | ||||| | 
---------------------------------------------------------caacagccaaacatatccctaat--atttattggctatacttttgttgatgaattattattttg-atgttgtaacttagttgat------------tttgtgtatatgtatgcagAGAGATGTAGGATTGGGTCCACACCACAAAATGAGTGGTACTTCTTCAGCCACAAGGATAGGAAGTATCCAACAGGGTCAAGGACTAATAGAGCCACAAA

upper sequence: GRMZM2G099144_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S6_458V6.1 (Physcomitrella patens), 3'ss of exon 1
gtatagtgcttgggcatgttacgttcatggcttcatccttcatgcatggcgattcagttacatgcacgcagctt-gttgtttagttgtttgtcttagcttgttcctgtggcttcctgcaca-gcacggtaatactc--attac--atcatgct-catccacttgcatcgatc-----ggtgcagAGAGGTGCCGG-ATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCCAGGACGAACCGCGCCACCAC
||| ||     |  |        | || |  |||||    | |   | | | ||     ||  | || |   || |||       | | |   |     ||    | |   |   |  | |   | |  |||||||  | |||  || |  |    |  ||||||  |||       ||||   |||  || ||    ||   | | |   |||| ||| ||||||||||||||||||||||||   || || || || ||   | |  | |||||         
gta-agccaacgaacccacattttgcaggatttcattaa-cgttggttgaggttagaaaactggaactcgctttagttcgaggaatatataaatagatatggatatatatatatatatatatatatgagaatactctaagtactgataacaccatctgtacttgcggcgacatcagAGGTGTGCAGAATTGGCGACGACGCACCCGAGAATCAGAGCGACTGGTACTTCTTCAGCCACAAGGACAAGAAATATCCTACTGGAAACCGCGCAAACCG---------

upper sequence: GRMZM2G099144_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
gtatagtgcttgggcatgttacgttcatggcttcatccttcatgcatggcgattcagttacatgcacgcagcttgttgtttagttgtttgtcttagcttgttcctgtggcttcctgcacagcacggtaatactcattacatcatgctcatccacttgcatcgatcg-gtgcagAGAGGTGCCGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCCAGGACGAACCGCGCCACCAC
                                                |  |  | ||  ||| |    ||||| |  ||| |  |        | |   |   ||    |   |||     |   |    ||  |  ||      ||    | |||| |    |     ||||  ||||||| || || || |||  |||| ||||||||||||||||||||||||| |||   || |||||||| ||| | ||||| ||| | ||||||  
------------------------------------------------gtaagacggt--catccctcaagcttctcatttcg--gaaaaaaaaaaccgttctttggaagtctttgcgttcta-aatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG

upper sequence: GRMZM2G099144_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ37712 (Selaginella moellendorffii), 3'ss of exon 1
gtatagtgcttgggcatgttacgttcatggcttcatccttcatgcatggcgattcagttacatgcacgcagcttgttgtttagttgtttgtcttagcttgttcctgtggcttcctgcacagcacggtaatactcattacatcatgctcatccacttgcatcgatcg-gtgcagAGAGGTGCCGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCCAGGACGAACCGCGCCACCAC
                                                |  |  | ||  ||| |    ||||| |  ||| |  |        | |   |   ||    |   |||     |   |    ||  |  ||      ||    | |||| |    |     ||||  ||||||| || || || |||  |||| ||||||||||||||||||||||||| |||   || |||||||| ||| | ||||| ||| | ||||||  
------------------------------------------------gtaagacggt--catccctcaagcttctcatttcgg-gaaaaaaaaaaccgttctttggaagtctttgcgttcta-aatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagcacggtaatactcattacatcatgctcatccacttgcatcgatcggtgcagAGAGGTGCCGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCCAGGACGAACCGCGCCACCAC
         taatact  TA-rich tract