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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTATACTACCTCAAGAAGAAGGTCGGGTTTGAGAAGTTCGACCTCGAGGTCATCAGGGAGGTCGACCTCAACAAGATCGAGCCGTGGGACCTGCAAGgtatagtgcttgggcatgttacgttcatggcttcatccttcatgcatggcgattcagttacatgcacgcagcttgttgtttagttgtttgtcttagcttgttcctgtggcttcctgcacagcacggtaatactcattacatcatgctcatccacttgcatcgatcggtgcag

Basic information

species Zea mays
transcript GRMZM2G099144_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099144_T01 (Zea mays), 5'ss of exon 1
lower sequence: 13113.m00212 (Oryza sativa), 5'ss of exon 1
CTGCTATACTACCTCAAGAAGAAGGTCGGGTTTGAGAAGTTCGACCTCGAGGTCATCAGGGAGGTCGACCTCAACAAGATCGAGCCGTGGGACCTGCAAGgtatagtgcttgggcatgttacgttcatggcttcatccttcatgcatggcgattcagttacatgcacgcagcttgttgtttagttgtttgtcttagcttgttcctgtggcttcctgcacagcacggtaatactcattacatcatgctcatccacttgcatcgatcggtgcag
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||    |     | |  | ||    |  |    |||||  |  |      | ||  | |   | |    ||  || |||             |||  | |   | | | |||                                                           
CTGCTCTACTACCTCAAGAAGAAGGTCGGGTTCGAGAAGTTCGACCTCGAGGTCATCCGCGAGGTCGACCTCAACAAGATCGAGCCATGGGACCTCCAAGgtacgtagt---agtaattaacaactactgaaa-atcctctaccccctctcaatcgatcatgcggatatggcgcgtagttc---------ctatagaatatcgttatagattc-----------------------------------------------------------

upper sequence: GRMZM2G099144_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA09G36820.1 (Glycine max), 5'ss of exon 1
CTGCTATACTACCTCAAGAAGAAGGTCGGGTTTGAGAAGTTCGACCTCGAGGTCATCAGGGAGGTCGACCTCAACAAGATCGAGCCGTGGGACCTGCAAGgtatagtgct----tgggcatgttacgttcatggcttcatccttc-----atgcatggcgattcagttacatgcacgcagcttgttgtttagttgtttgtcttagcttgttcctgtggcttcctgcacagcacggtaatactcattacatcatgctcatccacttgcatcgatcggtgcag
|| |  |||||| | |||||||||||    ||| ||||||| ||| | || ||||| || ||||||||| | |||||||| ||||| |||||| |||||||||   |  |    |   | || |    |  |   |   | ||||     |||| | | | |||||   ||| ||| ||  ||  |   |   | | ||    |                                                                             
CTTCATTACTACTTGAAGAAGAAGGTGTCCTTTCAGAAGTTTGACATGGATGTCATTAGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGgtactttcttattttttacttgcttgtcttgtaattctcttcttctaattatgctttgagcttcag---catacacacaaattaataagt--ctctctgatcgaa----------------------------------------------------------------------------