Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttagtttgttgtatcaaaaacatgcttctttgcatacatttatttagtatcatgtgaaatactcactaacttatcttgtaagcgcttgacttcgtgcagAACTTGGTTATGGAAGACTGCCAGGGGCATTAGCGGGGAAGAAGTTGAGGACCGTCTTCTCCCAAAGAGTCACGGGTGTGGAAAGACATTTCCTGGCCCA

Basic information

species Zea mays
transcript GRMZM2G095084_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095084_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g55300.2 (Oryza sativa), 3'ss of exon 7
gttagtttgttgtatcaa-aaacatgcttctttgca-----tacatttatttagtatcatgtgaaatactcactaacttatcttgtaagcgcttgacttcgtgcagAACTTGGTTATGGAAGACTGCCAGGGGCATTAGCGGGGAAGAAGTTGAGGACCGTCTTCTCCCAAAGAGTCACGGGTGTGGAAAGACATTTCCTGGCCCA
     | ||   ||  |  || ||| |||| | |||     ||||  | |    | ||||||  | |    | ||||| | ||| ||| || || |  ||  |||| || ||||||||||||| ||| || || ||||| || |||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||
-----tatgcattacaaggaagcatacttcat-gcagattttacaactttcggatgtcatgtctagttaataataactcagcttataaccgtttaatctcacgcagGACGTGGTTATGGAAGATTGCAAGAGGTATTAGTGGAGAAGAAGTTGAGGATCGTCTTCTACCAAAGAGCCATGGGTGTGGAAAGACATTTCCTGGCCCA

upper sequence: GRMZM2G095084_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA08G09400.1 (Glycine max), 3'ss of exon 7
gttagtttgttgtatcaaaaacatgcttctttgcatacatttattt--agtatcatgtga-aatactcactaacttatcttgtaagcgcttgacttcgtgcagAACTTGGTTATGGAAGACTGCCAGGGGCATTAGCGGGGAAGAAGTTGAGGACCGTCTTCTCCCAAAGAGTCACGGGTGTGGAAAGACATTTCCTGGCCCA
  |  |||  |   | ||  ||      || | |||    || | |  | |   || ||    || ||  |  || ||  |   |||  ||       ||||| |||||||| ||||| | ||| || || || || ||||||||||||||||  || || || |||||||| || || | ||| |||||||||||||| || 
tctgatttagttacttaattactcatgactgtccatttgattgtcttcattgcaatctgttggtattctattcctgattct---agcttttacagcattgcagTACTTGGTTGTGGAATATTGCTAGAGGAATCAGTGGGGAAGAAGTTGAGGGGCGACTACTTCCAAAGAGCCATGGTTCTGGCAAGACATTTCCTGGGCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtatcatgtgaaatactcactaacttatcttgtaagcgcttgacttcgtgcagAACTTGGTTATGGAAGACTGCCAGGGGCATTAGCGGGGAAGAAGTTGAGGACCGTCTTCTCCCAAAGAGTCACGGGTGTGGAAAGACATTTCCTGGCCCA
                      taacttat  TA-rich tract