Sequence
atgc intronic sequence ATGC exonic sequencegtttataatgagtcgtactagtgagtagatgcttttctttctgttgacaaaaatgttcagtagtacatggttattgttgtgttagttttgctgtgctcaggaaatcagctaaggttcctgttttctgcattcctttctcttgctatcttagttttccactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095084_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g55300.4 (Oryza sativa), 3'ss of exon 5
gtttataatgagtcgtactagtgagtagatgcttttctttctgttgacaaaaatgttcagtagtacatggttattgttgtgttagttttgctgtgctcaggaaatcagctaaggttcctgttttctgcattcctttctcttgctatcttagttttc-cactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAGA
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---------------------------------------------------------------------------gtt-tatatgcattccttt-ctttcgattgaagtttggtctcttttactctgtaaacct--ctcttcctattgcaatcctcacccaagatgttgctgtgttttgtagATGTTAGCAAAACTTGTCAGTGGGATGCACAAACCTGCTCAGCAGACAGTTGTTCCATCATCAGCAGTTCAAGATTTTCTAGTATCACTGCCCATAAAGA
upper sequence: GRMZM2G095084_T02 (Zea mays), 3'ss of exon 4
lower sequence: EFJ06077 (Selaginella moellendorffii), 3'ss of exon 5
gtttataatgagtcgtactagtgagtagatgcttttctttctgttgacaaaaatgttcagtagtacatggttattgttgtgttagttttgctgtgctcaggaaatcagctaaggttcctgttttctgcattcctttctcttgctatcttagttttccactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAGA
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------------------------------------------------------------------------------------------------------------------------------------gtatgttttac-gttttgggggactaa--gtgattccggtcttgtgtagATGCTTGCGAAGCTCTCGAGTGGAATGCACAAGCCTGCTCAACAAACGTTAGTCCCGTCATCGGCGGTTGAATCTTTACTCGCAACCTTGCCTATAAGTA
upper sequence: GRMZM2G095084_T02 (Zea mays), 3'ss of exon 4
lower sequence: EFJ29897 (Selaginella moellendorffii), 3'ss of exon 5
gtttataatgagtcgtactagtgagtagatgcttttctttctgttgacaaaaatgttcagtagtacatggttattgttgtgttagttttgctgtgctcaggaaatcagctaaggttcctgttttctgcattcctttctcttgctatcttagttttccactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAGA
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------------------------------------------------------------------------------------------------------------------------------------gtatgttttac-gttttgggggactaa--gtgattccggtcttgtgtagATGCTTGCGAAGCTCTCGAGTGGAATGCACAAGCCTGCTCAACAAACGTTAGTCCCGTCATCAGCGGTTGAATCCTTACTCGCAACCTTGCCTATAAGTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|160481590|gb|EY254422.1|EY254422EST: TTCTGGAGGAAACCCAATTCACATGCTCTGCTGGGATTGCTCACAATAAG ATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTT
genomic: TTCTGGAGGAAACCCAATTCACATGCTCTGCTGGGATTGCTCACAATAAGgtttataatg ... tactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTT
EST:
gi|160481474|gb|EY254578.1|EY254578EST: TTCTGGAGGAAACCCAATTCACATGCTCTGCTGGGATTGCTCACAATAAG ATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGAT
genomic: TTCTGGAGGAAACCCAATTCACATGCTCTGCTGGGATTGCTCACAATAAGgtttataatg ... tactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcattcctttctcttgctatcttagttttccactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAGA
ttcttat CT-rich tract
ttagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttataatgagtcgtactagtgagtagatgcttttctttctgttgacaaaaatgttcagtagtacatggttattgttgtgttagttttgctgtgctcaggaaatcagctaaggttcctgttttctgcattcctttctcttgctatcttagttttccactcattgttcttatactgtgcagATGTTAGCTAAACTTGTCAGTGGAATGCACAAGCCTGCTCAGCAAACAGTTGTCCCTTCTTCATCAGTTCAAGACTTACTAGCATCACTACCTGTGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA