Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggttcaccatcgtagactaatttactacaagttataattgcgcaggacttacatgacatattatagaacaataagtctatattttgcacctgaactttcagGTTGTTGCAATCCTTGCAAGCAAAGGGAAGTGCGAGCGGGCATCCATCGACGAAGTTTATCTTGACCTTACTGATGCAGCAAATGAAATGGTCTTACAAG

Basic information

species Zea mays
transcript GRMZM2G095084_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095084_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g55300.2 (Oryza sativa), 3'ss of exon 3
gtcggttcaccatcgtagactaatttactacaagttataattgcgcaggacttacatgacatattatagaacaataagtctatattttgcacctgaactttcagGTTGTTGCAATCCTTGCAAGCAAAGGGAAGTGCGAGCGGGCATCCATCGACGAAGTTTATCTTGACCTTACTGATGCAGCAAATGAAATGGTCTTACAAG
    |||   |   | |   |||||   ||||| | | ||| |   | ||      |  |||   || || || |          |||||  || |||| |||||||||  |||||||  | | ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| | ||| || 
----gttggtctgtgcatcttaattgg-tacaattgacaatggaaaatgaaggtgcttccatggcattga-cagt----------tttgcgtctaaactctcagGTTGTCACAATCCTCTCGACCAAGGGGAAGTGTGAGCGAGCATCCATCGACGAAGTTTATCTTGACCTTACTGATGCAGCCAAGGAAATGCTTTTAGAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481590|gb|EY254422.1|EY254422
EST:     TGGCGCGTGGCAAGGCTGACCTTAATCTTTACAGAAGTGATGGTGCTGAG                         GTAGTTGCAATCCTTGCAAGCAAAGGGAAGTGCGAGCGGGCATCCATCGAC
genomic: TGGCGCGTGGCAAGGCTGACCTTAATCTTTACAGAAGTGCTGGTGCTGAGgtcggttcac ... gaactttcagGTTGTTGCAATCCTTGCAAGCAAAGGGAAGTGCGAGCGGGCATCCATCGAC
EST: gi|160481474|gb|EY254578.1|EY254578
EST:     TGGCGCGTGGCAAGGCTGACCTTAATCTTTACAGAAGTGCTGGTGCTGAG                         GTTGTTGCAATCCTTGCAAGCAAAGGGAAGTGCGAGCGGGCATCCATCGAC
genomic: TGGCGCGTGGCAAGGCTGACCTTAATCTTTACAGAAGTGCTGGTGCTGAGgtcggttcac ... gaactttcagGTTGTTGCAATCCTTGCAAGCAAAGGGAAGTGCGAGCGGGCATCCATCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttacatgacatattatagaacaataagtctatattttgcacctgaactttcagGTTGTTGCAATCCTTGCAAGCAAAGGGAAGTGCGAGCGGGCATCCATCGACGAAGTTTATCTTGACCTTACTGATGCAGCAAATGAAATGGTCTTACAAG
 gacttac  putative branch site (score: 2)
                                                ctttc  putative PPT
           atattatagaacaata  TA-rich tract