1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcattcagcttcgtcagcaccactatcttctcgtggcacacatttatgaactacctttttttatgttttactaatttcttgggtgtcaaattgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTATTCCTTTGAACTACGAAGGTGCGGCAGAAATGTTGTAGCATTTGTATCG
species | Zea mays |
transcript | GRMZM2G091435_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAC-TTTAGGCCATACACCAACCCAG GTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTAEST: gi|166629047|gb|EG261260.1|EG261260
genomic: GAACTTTTAGGCCATACACCAACTCAGgtttgttcac ... ttgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTA
EST: GAGAACTTTTAGGCCATACACCAACCCAG GTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTAEST: gi|32923268|gb|CF028080.1|CF028080
genomic: GAGAACTTTTAGGCCATACACCAACTCAGgtttgttcac ... ttgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTA
EST: TGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACCCAG GTGGTTGCTGGTGCATTGCTTGGGTGTAEST: gi|8401376|gb|BE057010.1|BE057010
genomic: TGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACTCAGgtttgttcac ... ttgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTA
EST: TGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACCCAG GTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTAEST: gi|166636873|gb|EG172033.1|EG172033
genomic: TGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACTCAGgtttgttcac ... ttgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTA
EST: AACTTTTAGGCCATACACCAACCCAG GTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTAEST: gi|78076637|gb|DV505071.1|DV505071
genomic: AACTTTTAGGCCATACACCAACTCAGgtttgttcac ... ttgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTA
EST: TGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACTCAG GTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTAEST: gi|166566343|gb|EG175732.1|EG175732
genomic: TGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACTCAGgtttgttcac ... ttgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTA
EST: GAACTTTTAGGCCATACACCAACCCAG GTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTAEST: gi|91871453|gb|EB401428.1|EB401428
genomic: GAACTTTTAGGCCATACACCAACTCAGgtttgttcac ... ttgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTA
EST: TGTTTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACTCAG GTGGTTGGTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTA
genomic: TGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACTCAGgtttgttcac ... ttgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTA
atgaactacctttttttatgttttactaatttcttgggtgtcaaattgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTATTCCTTTGAACTACGAAGGTGCGGCAGAAATGTTGTAGCATTTGTATCG
tactaat putative branch site (score: 1)
ttgctccc putative PPT
tttttttatgttttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattcagcttcgtcagcaccactatcttctcgtggcacacatttatgaactacctttttttatgttttactaatttcttgggtgtcaaattgctcccagGTGGTTGCTGGTGCATTGCTTGGGTGTACAATAGCCACAGCAGGACAATTATTCCTTTGAACTACGAAGGTGCGGCAGAAATGTTGTAGCATTTGTATCG
- - -cagcttc
- - - - - - - - -caccact
- - - - - - - - - - - - - - - - - -gcacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcttg