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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaataattctttgcgtgccatctgtactgttggttcaatagcctttctgtatcgttacaaccttgtgatagctctctatgtattatggtaacaatttgtgtggtgcttatgttgaacttaatttagttttctccgatcattagGTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACTCAG

Basic information

species Zea mays
transcript GRMZM2G091435_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091435_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g67560.1 (Oryza sativa), 3'ss of exon 3
----gtacgtaataattctttgcgtgccatctgtactgttggttcaatagcctttctgta------tcgttacaaccttgtgatagctctctatgtattatggtaaca-----------atttgtgtg-gtgcttatgttgaacttaatttagttttctccgatcattagGTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACTCAG
    | |  || |  ||||||  |||  |     | | |        ||   |     |          |||  ||| |||  ||| | |   | |||| |  | |||           |||||| || |   ||||  ||||||  || |  |||    | ||  | |||| |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||||| ||||| |||
gtatgcagttactgtttctttatgtgttaatatcaatatgaacatgctaatatcatcatgagacaccttttaacaccatgtattagatttgcctctattgtaatgacacaaagaaagatatttgtttgtgcagttatactgaactgtatctcatttctaactatattcagGTGTTGAATCAAATAGTCTGCGAACTTCCTTCTGAACATCCCTTGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAG

upper sequence: GRMZM2G091435_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g67560.2 (Oryza sativa), 3'ss of exon 3
----gtacgtaataattctttgcgtgccatctgtactgttggttcaatagcctttctgta------tcgttacaaccttgtgatagctctctatgtattatggtaaca-----------atttgtgtg-gtgcttatgttgaacttaatttagttttctccgatcattagGTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACTCAG-------
    | |  || |  ||||||  |||  |     | | |        ||   |     |          |||  ||| |||  ||| | |   | |||| |  | |||           |||||| || |   ||||  ||||||  || |  |||    | ||  | |||| |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||||| ||||| |||       
gtatgcagttactgtttctttatgtgttaatatcaatatgaacatgctaatatcatcatgagacaccttttaacaccatgtattagatttgcctctattgtaatgacacaaagaaagatatttgtttgtgcagttatactgaactgtatctcatttctaactatattcagGTGTTGAATCAAATAGTCTGCGAACTTCCTTCTGAACATCCCTTGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGGTTTGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32923268|gb|CF028080.1|CF028080
EST:     TAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG                         GTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAG
genomic: TAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAGgtacgtaata ... cgatcattagGTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAG
EST: gi|8401376|gb|BE057010.1|BE057010
EST:     TGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG                         GTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAG
genomic: TGGTATCAGACTGCATGCTGGAAAGCAAGCAGAGgtacgtaata ... cgatcattagGTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAG
EST: gi|78076637|gb|DV505071.1|DV505071
EST:     TAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG                         GTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAG
genomic: TAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAGgtacgtaata ... cgatcattagGTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAG
EST: gi|91871453|gb|EB401428.1|EB401428
EST:     TAATGTATGATGCTTTTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG                         GTATTGAATCAAATAGTTTGTGAACTTCCTTTTGAACACCCCTTGTTTGAG
genomic: TAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAGgtacgtaata ... cgatcattagGTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacaatttgtgtggtgcttatgttgaacttaatttagttttctccgatcattagGTATTGAATCAAATAGTTTGTGAACTTCCTTCTGAACACCCCTTGTCTGAGACAAGACCACTGCGAGAACTTTTAGGCCATACACCAACTCAG
                                      ttttctcc  CT-rich tract
                          aacttaatttagtttt  TA-rich tract