1 5' 3' | 2 5' 3' | 3 5' 3' |
...tggacgttattctgttgcgtgtgggcatattgtgcacacgtttatgctgacttcctccaatttttgaggtctcacgaatttattttttgtgacttggcagGTAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG
species | Zea mays |
transcript | GRMZM2G091435_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGCTTTAGCTGCTCCCTCTTTGCAACAGCAACTATATTTGCAAGCGTG GTAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAGEST: gi|78076637|gb|DV505071.1|DV505071
genomic: ATGGCTTTAGCTGCTCCCTCTTTGCAACAGCAACTATATTTGCAAGCGTGgtaggctatc ... gacttggcagGTAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG
EST: ATGGCTTTAGCTGCTCCCTCTTTGCAACAGCAACTATATTTGCAAGCGTG GTAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAGEST: gi|91871453|gb|EB401428.1|EB401428
genomic: ATGGCTTTAGCTGCTCCCTCTTTGCAACAGCAACTATATTTGCAAGCGTGgtaggctatc ... gacttggcagGTAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG
EST: ATGGCTTTAGCTGCTCCCTCTTTGCAACAGCAACTATATTTGCAAGCGTG GTAATGTATGATGCTTTTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG
genomic: ATGGCTTTAGCTGCTCCCTCTTTGCAACAGCAACTATATTTGCAAGCGTGgtaggctatc ... gacttggcagGTAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG
gctgacttcctccaatttttgaggtctcacgaatttattttttgtgacttggcagGTAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG
aatttattttttgtga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggacgttattctgttgcgtgtgggcatattgtgcacacgtttatgctgacttcctccaatttttgaggtctcacgaatttattttttgtgacttggcagGTAATGTATGATGCTTCTGGTATCAGACTGCATGCTGGAAAGCAAGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - -ctgttgc
- - - - - - - - - - - - - - - - -gcacacg
- - - - - - - - - - - - - - - - - - - - - tatgctg