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gtaataaatgcatggtgctgtcgtttacaaagaaacgtgctttaatttctcactcactcaccggatacttattatctgtgtgcgtggtgttttaatttgtttggcagTCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCAAAGGCGGGCCCTTGGAGAAAG
species | Zea mays |
transcript | GRMZM2G088245_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTCAGGTCACAGACGAGTTGGACACCCAGAACTTTGAGAAGTTTGAGGAG TCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCAAAGGCGGGCCCTTGGAGAEST: gi|9954068|gb|BE640651.1|BE640651
genomic: CTCAGGTCACAGACGAGTTGGACACCCAGAACTTTGAGAAGTTTGAGGAGgtaataaatg ... tgtttggcagTCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCAAAGGCGGGCCCTTGGAGA
EST: CACCCAGAACTTTGAGAAGTTTGAGGAG TCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCGAAGACGGGCCCTTGGAGAEST: gi|6952724|gb|AW424792.1|AW424792
genomic: CACCCAGAACTTTGAGAAGTTTGAGGAGgtaataaatg ... tgtttggcagTCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCAAAGGCGGGCCCTTGGAGA
EST: CCAGAACTTTGAGAAGTTTGAGGAG TCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCAAAGGCGGGCCCTTGGAGAEST: gi|78180424|gb|DV550797.1|DV550797
genomic: CCAGAACTTTGAGAAGTTTGAGGAGgtaataaatg ... tgtttggcagTCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCAAAGGCGGGCCCTTGGAGA
EST: CTCAGGTCACAGACGAGTTGGACACCCAGAACTTTGAGAAGTTTGAGGAG TCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCGAAGACGGGCCCTTGGAGAEST: gi|12047061|gb|BF729200.1|BF729200
genomic: CTCAGGTCACAGACGAGTTGGACACCCAGAACTTTGAGAAGTTTGAGGAGgtaataaatg ... tgtttggcagTCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCAAAGGCGGGCCCTTGGAGA
EST: CTTTGAGAAGTTTGAGGAG TCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCGAAGACGGGCCCTTGGAGAEST: gi|71298682|gb|DR785316.1|DR785316
genomic: CTTTGAGAAGTTTGAGGAGgtaataaatg ... tgtttggcagTCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCAAAGGCGGGCCCTTGGAGA
EST: CTCAGGTCACAGACGAGTTGGACACCCAGAACTTTGAGAAGTTTGAGGAG TCCTCGGACGGTAGTAGCGTTCAGGGTTC
genomic: CTCAGGTCACAGACGAGTTGGACACCCAGAACTTTGAGAAGTTTGAGGAGgtaataaatg ... tgtttggcagTCCTCGGACGGTAGTAGCGTTCAGGGTTC
ctcactcaccggatacttattatctgtgtgcgtggtgttttaatttgtttggcagTCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCAAAGGCGGGCCCTTGGAGAAAG
tttgttt CT-rich tract
tgttttaatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaatgcatggtgctgtcgtttacaaagaaacgtgctttaatttctcactcactcaccggatacttattatctgtgtgcgtggtgttttaatttgtttggcagTCCTCGGACGGTAGTAGCGTTCAGGGTTCAGCAAAGGCGGGCCCTTGGAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA