1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacgtatccatgcatgcgtccgcgctgaaacccttggtcattttatgcttacatttagctgtgcacgcgcgcgcgcagGCGCAGATTCACCTGAAGGAGACGGAGGGAGAGGGGAGCCGCAGCCTGAAGTCGACGACGAAACAGCCTCCGCGGAAGGAAGCGCCCGGAAACCAGCAGA
species | Zea mays |
transcript | GRMZM2G088245_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTTTGTTTG GGGCAGATTCACCTGAAGGAGACGGAGGGAGAGGGGAGCCGCAGCCTGAAGEST: gi|9954068|gb|BE640651.1|BE640651
genomic: GCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGTTCGgtacgtatcc ... gcgcgcgcagGCGCAGATTCACCTGAAGGAGACGGAGGGAGAGGGGAGCCGCAGCCTGAAG
EST: GCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGTTCG GCGCAGATTCACCTGAGGGAGACGGAGGGGGAGGGGAGCCGCAGCTTGAAGEST: gi|78180424|gb|DV550797.1|DV550797
genomic: GCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGTTCGgtacgtatcc ... gcgcgcgcagGCGCAGATTCACCTGAAGGAGACGGAGGGAGAGGGGAGCCGCAGCCTGAAG
EST: GCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGTTCG GCGCAGATTCACCTGAGGGAGACGGAGGGGGAGGGGAGCCGCAGCTTGAAG
genomic: GCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGTTCGgtacgtatcc ... gcgcgcgcagGCGCAGATTCACCTGAAGGAGACGGAGGGAGAGGGGAGCCGCAGCCTGAAG
gctgaaacccttggtcattttatgcttacatttagctgtgcacgcgcgcgcgcagGCGCAGATTCACCTGAAGGAGACGGAGGGAGAGGGGAGCCGCAGCCTGAAGTCGACGACGAAACAGCCTCCGCGGAAGGAAGCGCCCGGAAACCAGCAGA
tgcttac putative branch site (score: 4)
tcattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtatccatgcatgcgtccgcgctgaaacccttggtcattttatgcttacatttagctgtgcacgcgcgcgcgcagGCGCAGATTCACCTGAAGGAGACGGAGGGAGAGGGGAGCCGCAGCCTGAAGTCGACGACGAAACAGCCTCCGCGGAAGGAAGCGCCCGGAAACCAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA