1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactgcaccgtaccattcattcagaccatatatgctgttgttgtgtttttcatcctgatacatgcatgcatgcaaccttgcgctcctgcgcagCTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGTTCG
species | Zea mays |
transcript | GRMZM2G088245_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TACCTACAAGAACTTTGAACTTGTGAACGATCACGATGTCCCCGGCATGG CTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTTTGTEST: gi|9954068|gb|BE640651.1|BE640651
genomic: TACCTACAAGAACTTTGAACTTGTGAACGATCACGATGTCCCCGGCATGGgtactgcacc ... tcctgcgcagCTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGT
EST: TACCTACAAGAACTTTGAACTTGTGAACGATCACGATGTCCCCGGCATGG CTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGTEST: gi|6952724|gb|AW424792.1|AW424792
genomic: TACCTACAAGAACTTTGAACTTGTGAACGATCACGATGTCCCCGGCATGGgtactgcacc ... tcctgcgcagCTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGT
EST: TACCTACAAGAACTTTGAACTTGTGAACGATCCCGATGTCCCCGGCATGG CTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCEST: gi|78180424|gb|DV550797.1|DV550797
genomic: TACCTACAAGAACTTTGAACTTGTGAACGATCACGATGTCCCCGGCATGGgtactgcacc ... tcctgcgcagCTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACC
EST: TACCTACAAGAACTTTGAACTTGTGAACGATCACGATGTCCCCGGCATGG CTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGTEST: gi|12047061|gb|BF729200.1|BF729200
genomic: TACCTACAAGAACTTTGAACTTGTGAACGATCACGATGTCCCCGGCATGGgtactgcacc ... tcctgcgcagCTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGT
EST: TACCTACAAGACCTTTGAACTTGTGAACGATCCCGATGTCCCCGGCATGG CTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGT
genomic: TACCTACAAGAACTTTGAACTTGTGAACGATCACGATGTCCCCGGCATGGgtactgcacc ... tcctgcgcagCTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGT
tgttgtgtttttcatcctgatacatgcatgcatgcaaccttgcgctcctgcgcagCTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGTTCG
tcctgat putative branch site (score: 5)
cgctcct putative PPT
tttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgcaccgtaccattcattcagaccatatatgctgttgttgtgtttttcatcctgatacatgcatgcatgcaaccttgcgctcctgcgcagCTGAGCTGAAGAAGAAGGAGAAGGCAAAGAGACCAAGCGTCAAGTCTCTGTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA