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gtaagtaaatatagtcctttggggctagtttggaagttcagacccccttgaaaattggaggggatttttcaaggggatttgagtttccaaactaacccttgggagtacctaccaccccactctccacctcaatgaacaccaaaaaaagagagaccataaatcctgcgtttcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACCTGTTCCGATTGAAAAATGTAGAGGAGGCTACAAAACTATCGACAGCAA
species | Zea mays |
transcript | GRMZM2G086484_T04 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|60400869|gb|DN233676.1|DN233676
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|83278326|gb|DV942334.1|DV942334
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|12972011|gb|BG267769.1|BG267769
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: CTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAGAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAEST: gi|6022289|gb|AW067217.1|AW067217
genomic: CTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCA-AGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATA
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCCCAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|19770206|gb|BQ034927.1|BQ034927
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|19351231|gb|BM895763.1|BM895763
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGNTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|31351667|gb|CD436024.1|CD436024
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGGGACACAGTTGTAGCTCGAACATACEST: gi|19770249|gb|BQ034970.1|BQ034970
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|18649762|gb|BM498581.1|BM498581
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|60355351|gb|DN222324.1|DN222324
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|71762836|gb|DR960773.1|DR960773
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|19769590|gb|BQ034311.1|BQ034311
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|87153971|gb|DY398760.1|DY398760
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|71311912|gb|DR792439.1|DR792439
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|211121251|gb|FL454290.1|FL454290
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|33091533|gb|CF051527.1|CF051527
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATACTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCEST: gi|78024638|gb|DV493025.1|DV493025
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|19351230|gb|BM895762.1|BM895762
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|71315320|gb|DR794272.1|DR794272
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|22491304|gb|BU051227.1|BU051227
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAACCTTCACAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACEST: gi|37374586|gb|CF623668.1|CF623668
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
EST: TAAAAATGAATCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA GATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
genomic: TAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCAgtaagtaaat ... tcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATAC
cacctcaatgaacaccaaaaaaagagagaccataaatcctgcgtttcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACCTGTTCCGATTGAAAAATGTAGAGGAGGCTACAAAACTATCGACAGCAA
tttcattttc CT-rich tract
aaaaaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaatatagtcctttggggctagtttggaagttcagacccccttgaaaattggaggggatttttcaaggggatttgagtttccaaactaacccttgggagtacctaccaccccactctccacctcaatgaacaccaaaaaaagagagaccataaatcctgcgtttcattttcagGATGCACAATCAAGTGAATCAGCTGGTGACACAGTTGTAGCTCGAACATACCTGTTCCGATTGAAAAATGTAGAGGAGGCTACAAAACTATCGACAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG