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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taggtatatatatttacacatcgttcttttgccagagctacacagctgtagtattgtttctggtgcggacaaaatgctaatgtttttaaactggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA

Basic information

species Zea mays
transcript GRMZM2G086484_T04
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31352814|gb|CD437171.1|CD437171
EST:     CAGAGAAAGCATCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|60400869|gb|DN233676.1|DN233676
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|83278326|gb|DV942334.1|DV942334
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|6022289|gb|AW067217.1|AW067217
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|19770206|gb|BQ034927.1|BQ034927
EST:     CAGAGAAAGCATCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|19351231|gb|BM895763.1|BM895763
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|31351667|gb|CD436024.1|CD436024
EST:     CAGAGAAAGCATCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|19770249|gb|BQ034970.1|BQ034970
EST:     CAGAGAAAGCATCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|18649762|gb|BM498581.1|BM498581
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|60355351|gb|DN222324.1|DN222324
EST:     CAGAGAAAGCATCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|71762836|gb|DR960773.1|DR960773
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|19769590|gb|BQ034311.1|BQ034311
EST:     CAGAGAAAGCATCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|87153971|gb|DY398760.1|DY398760
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|71311912|gb|DR792439.1|DR792439
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|211121251|gb|FL454290.1|FL454290
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|33091533|gb|CF051527.1|CF051527
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|78024638|gb|DV493025.1|DV493025
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|19351230|gb|BM895762.1|BM895762
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|71315320|gb|DR794272.1|DR794272
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|22491304|gb|BU051227.1|BU051227
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC
EST: gi|37374586|gb|CF623668.1|CF623668
EST:     CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGAT                         GTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAT
genomic: CAGAGAAAGCTTCCAAAGAATCCACTCCTACCATTGTTATAAGAAACGATgtatgttttc ... ctggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtagtattgtttctggtgcggacaaaatgctaatgtttttaaactggtagcagGTTGGTAAAATCCTCCTGAATGCTCTGATCTACAAGGGGATAAAAATGAACCTTCAGAAGAATACGGTTGCTTCGATATTTCATACTTCA
                             tgctaat  putative branch site (score: 2)
                                taatgtttttaaact  TA-rich tract