1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacggctactcactggtttgtataatatactttgtttacatttattgcagagtcttctcgcagacttatgtactatatattcatatctattatgtcaatgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTTTCCAGTTTGGTGGAAATAATGTCATATTTGGTGGCAAGAAGGATGCACC
species | Zea mays |
transcript | GRMZM2G086484_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTTEST: gi|87156040|gb|DY400829.1|DY400829
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTTEST: gi|22546264|gb|BU098575.1|BU098575
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTTEST: gi|31351667|gb|CD436024.1|CD436024
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTTEST: gi|149014128|gb|EE043668.2|EE043668
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: CCGAACCTTTTTTCATCGCCTTCTCAGCNNNNNNNCACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTTEST: gi|71311913|gb|DR792440.1|DR792440
genomic: CCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAA-CACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTTEST: gi|76915806|gb|DV166129.1|DV166129
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAAEST: gi|13558335|gb|BG549691.1|BG549691
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAA
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTTEST: gi|94473209|gb|EB702167.1|EB702167
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAA-CACCAGAATACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTTEST: gi|40334296|gb|CK368366.1|CK368366
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATTGCAGTAAACCAGCTTEST: gi|78105254|gb|DV523672.1|DV523672
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTTCAGTGATAGCAGTAAACCAEST: gi|88757793|gb|DY541934.1|DY541934
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCA
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGEST: gi|26558697|gb|CA830932.1|CA830932
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAG
EST: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTG GTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCACCTT
genomic: ACCGAACCTTTTTTCATCGCCTTCTCAGCAAAAAACACCAGATTACAGTGgtacggctac ... tgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTT
cttctcgcagacttatgtactatatattcatatctattatgtcaatgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTTTCCAGTTTGGTGGAAATAATGTCATATTTGGTGGCAAGAAGGATGCACC
ttatgtactatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggctactcactggtttgtataatatactttgtttacatttattgcagagtcttctcgcagacttatgtactatatattcatatctattatgtcaatgacatccagGTATGTTTGCTGACAAGAAGAACACGTCCAGTGATAGCAGTAAACCAGCTTTCCAGTTTGGTGGAAATAATGTCATATTTGGTGGCAAGAAGGATGCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG