1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaggacacacaaacatgatcgctcgcttcacgttactacatttggtttcaggtatggatcgaggggccctagctcacattttgttcctgtttgtgatcagGTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCTTCGTTGTCGTACCTCAGCCAGCCTCACCATGGAAGCCCTCTTGGCTGCA
species | Zea mays |
transcript | GRMZM2G085916_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAACGTCCTCCTTAAAGAT GTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCTEST: gi|12968748|gb|BG265694.1|BG265694
genomic: CTAACGTCCTCCCTAAAGATgtgaggacac ... ttgtgatcagGTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCT
EST: TGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGAT GTACATCAGTCTTGTGGTCCGCCGCATTTCTCGCTGGAGACCTCAGACGCTEST: gi|5871680|gb|AW018151.1|AW018151
genomic: TGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGATgtgaggacac ... ttgtgatcagGTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCT
EST: TGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGAT GTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCTEST: gi|67019403|gb|CO448152.1|CO448152
genomic: TGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGATgtgaggacac ... ttgtgatcagGTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCT
EST: TGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGAT GTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCTEST: gi|78084502|gb|DV512895.1|DV512895
genomic: TGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGATgtgaggacac ... ttgtgatcagGTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCT
EST: TGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGAT GTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCTEST: gi|67018831|gb|CO447580.1|CO447580
genomic: TGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGATgtgaggacac ... ttgtgatcagGTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCT
EST: TGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGAT GTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCT
genomic: TGAATCCCCAGGTGGACTTAAATAGCCTGCCTAACGTCCTCCCTAAAGATgtgaggacac ... ttgtgatcagGTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCT
tttcaggtatggatcgaggggccctagctcacattttgttcctgtttgtgatcagGTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCTTCGTTGTCGTACCTCAGCCAGCCTCACCATGGAAGCCCTCTTGGCTGCA
agctcac putative branch site (score: 3)
ttttgttcctgttt CT-rich tract
attttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggacacacaaacatgatcgctcgcttcacgttactacatttggtttcaggtatggatcgaggggccctagctcacattttgttcctgtttgtgatcagGTACATCAGTCTTGTGGTCCGCCACATTTCTCGCTGGAGACCTCAGACGCTTCGTTGTCGTACCTCAGCCAGCCTCACCATGGAAGCCCTCTTGGCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG