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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGTTCTTCAAGCAAGCATGCGAGCTGGCTCCTATTTTCACTGAGCTTGTGGATTGTGTGAGCTTAGATGGGGAGTCCTTGCAAGCTGCTTTGTCTAGgcaagttctgaattctatacactggattcttgtgataccaatgtggtatatatctttgttcagagcataccgtgaatagatgagattatcaactgatttt...

Basic information

species Zea mays
transcript GRMZM2G085916_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67019403|gb|CO448152.1|CO448152
EST:     GAGCTTA-TTGGGGAGTCCTTGC-AGCTGCTTTGCCTAG                         AACAAAGCAGGTTCATGAATTTACCGCAAGGCTGCTAGATATTCATGATAA
genomic: GAGCTTAGATGGGGAGTCCTTGCAAGCTGCTTTGTCTAGgcaagttctg ... ataatttcagAACAAAGCAGGTTCATGAATTTACCGCAAGGCTGCTAGATATTCATGATAA
EST: gi|67018831|gb|CO447580.1|CO447580
EST:     GGGGAGTCCTTGC-AGCTGCTTTGTCTAG                         AACAAAGCAGGTTCATGAATTTACCGCAAGGCTGCTAGATATTCATGATAA
genomic: GGGGAGTCCTTGCAAGCTGCTTTGTCTAGgcaagttctg ... ataatttcagAACAAAGCAGGTTCATGAATTTACCGCAAGGCTGCTAGATATTCATGATAA
EST: gi|56691639|gb|CX129542.1|CX129542
EST:     GTGGATTGTGTGAGCTTAGATGGGGAGTCCTTGCAAGCTGCTTTGTCTAG                         AACAAAGCAGGTTCATGAATTTACCGCAAGGCTGCTAGATATTCATGATAA
genomic: GTGGATTGTGTGAGCTTAGATGGGGAGTCCTTGCAAGCTGCTTTGTCTAGgcaagttctg ... ataatttcagAACAAAGCAGGTTCATGAATTTACCGCAAGGCTGCTAGATATTCATGATAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATCGTTCTTCAAGCAAGCATGCGAGCTGGCTCCTATTTTCACTGAGCTTGTGGATTGTGTGAGCTTAGATGGGGAGTCCTTGCAAGCTGCTTTGTCTAGgcaagttctgaattctatacactggattcttgtgataccaatgtggtatatatctttgttcagagcataccgtgaatagatgagattatcaactgatttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT