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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTGGCAATGCAGTGATGCTCGGTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAGgtaaatttccactatcagttcacaactggaacgactcattgttttgtcgttctagaatggaaagggtcgacctattctctctgaaaaccctttttcttttcgcattccgttttgcag

Basic information

species Zea mays
transcript GRMZM2G085916_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5871680|gb|AW018151.1|AW018151
EST:     TCGGTGAAATCATAAACTACGTGCAGTCCCTACAATG-CAAGTTGAG                         TTTATGTCCATGAAACTGGCCNCCGTGAATCCCCAGGTGGACTTAAATAGC
genomic: TCGGTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAGgtaaatttcc ... cgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
EST: gi|67019403|gb|CO448152.1|CO448152
EST:     TGCTCGGTGAAATCATAAACTACGTGCATTCCCTACAATGACAAGTTGAG                         TTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
genomic: TGCTCGGTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAGgtaaatttcc ... cgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
EST: gi|78084502|gb|DV512895.1|DV512895
EST:     GTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAG                         TTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
genomic: GTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAGgtaaatttcc ... cgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
EST: gi|67018831|gb|CO447580.1|CO447580
EST:     TGCTCGGTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAG                         TTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
genomic: TGCTCGGTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAGgtaaatttcc ... cgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
EST: gi|56691639|gb|CX129542.1|CX129542
EST:     TGCTCGGTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAG                         TTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC
genomic: TGCTCGGTGAAATCATAAACTACGTGCAGTCCCTACAATGACAAGTTGAGgtaaatttcc ... cgttttgcagTTTATGTCCATGAAACTGGCCACCGTGAATCCCCAGGTGGACTTAAATAGC