1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTACTTGCGCTATGGTTCCTTTGCATCACGAGCGGAGATTCTGATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGTGgtacgttaacgacactgcctgccgtgggccggaatttgctagttcttgaacgaacattgtccagttataggctataacataataaatatatacaatgtgcttcgaaacttttttttgtgaag
species | Zea mays |
transcript | GRMZM2G085711_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGT- GTAAAATATACCTACAATGGACAGCAGTTCGATGCGACTGCTAGACCAGAAEST: gi|67027734|gb|CO456483.1|CO456483
genomic: GATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGTGgtacgttaac ... ttttgtgaagGT-AAATATACCTACAATGGACAGCAGTTCGATGCGACTGCTAGACCAGAA
EST: GATGTCCAAGAACGGACCATTCAGCTCCTGCGTGCTGCGCGGATTTAGTG GTAAATATACCTACAATGGACAGCAGTTCGATGCGACTGCTAGACCAGAAGEST: gi|86474415|gb|DY240785.1|DY240785
genomic: GATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGTGgtacgttaac ... ttttgtgaagGTAAATATACCTACAATGGACAGCAGTTCGATGCGACTGCTAGACCAGAAG
EST: GATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGTG GTAAATATACCTACAATGGACAGCAGTTCGATGCGACTGCTAGACCAGAAGEST: gi|211540961|gb|FL453890.1|FL453890
genomic: GATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGTGgtacgttaac ... ttttgtgaagGTAAATATACCTACAATGGACAGCAGTTCGATGCGACTGCTAGACCAGAAG
EST: GATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGTG GTAAATATACCTACAATGGACAGCAGTTCGEST: gi|93283843|gb|EB676107.1|EB676107
genomic: GATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGTGgtacgttaac ... ttttgtgaagGTAAATATACCTACAATGGACAGCAGTTCG
EST: GATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGTG GTAAATATACCTACAATGGACAGCAGTTCGATGCGACTGCTAGACCAGAAG
genomic: GATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGTGgtacgttaac ... ttttgtgaagGTAAATATACCTACAATGGACAGCAGTTCGATGCGACTGCTAGACCAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACTTGCGCTATGGTTCCTTTGCATCACGAGCGGAGATTCTGATGTCCAAGAACGGACCATTCAGCTCCTGCATGCTGCGCGGATTTAGTGgtacgttaacgacactgcctgccgtgggccggaatttgctagttcttgaacgaacattgtccagttataggctataacataataaatatatacaatgtgcttcgaaacttttttttgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC