1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccaattccatcaacagtttttgttttttctttgttggatcaacatgattttttctgttacatatgcatgtcattttagaacattttcactgtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGTCCATTCTGCCTCTTCTCGAGAAGGCCAAGAGCATTGTCCCCTCATGGC
species | Zea mays |
transcript | GRMZM2G085711_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGEST: gi|78120186|gb|DV538570.1|DV538570
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGEST: gi|93012636|gb|EB638156.1|EB638156
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGEST: gi|76013368|gb|DT940538.1|DT940538
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGEST: gi|71323603|gb|DR798474.1|DR798474
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGEST: gi|91876116|gb|EB406073.1|EB406073
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGEST: gi|78120472|gb|DV538856.1|DV538856
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGEST: gi|76011901|gb|DT939071.1|DT939071
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGEST: gi|94472194|gb|EB701152.1|EB701152
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGEST: gi|71329501|gb|DR801472.1|DR801472
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGEST: gi|78120622|gb|DV539006.1|DV539006
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
EST: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAG TTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
genomic: GGCAGATGGACCTCCTCCGCATCGGCGACGAGATCGAATTTTTTGCCAAGgcaagacgac ... gtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAG
gattttttctgttacatatgcatgtcattttagaacattttcactgtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGTCCATTCTGCCTCTTCTCGAGAAGGCCAAGAGCATTGTCCCCTCATGGC
ttttcactgtccct CT-rich tract
attttagaacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaattccatcaacagtttttgttttttctttgttggatcaacatgattttttctgttacatatgcatgtcattttagaacattttcactgtccctgcagTTGAAGCCAGGTCTGAGCTCGTATGCTGGGCGACCCCAGGAGGCCGCAAAGTCCATTCTGCCTCTTCTCGAGAAGGCCAAGAGCATTGTCCCCTCATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - atcaaca
- - - - - - - -gtttttg
- - - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt