1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CACAAGAAATTCGTGAACTTTGGATGGAGTATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAGgtacagtttcatatttcaatccatcaagttggtggcatgattgcaacgtctgtctgaagctatcagatggtagttcttgtgatcattcaataggcaatgc...
species | Zea mays |
transcript | GRMZM2G081144_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAG GTTGAGAGGATACTTCAAGCTCTGGAGTATGAAAAGGEST: gi|31910399|gb|CD651404.1|CD651404
genomic: ATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAGgtacagtttc ... atatttccagGTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGG
EST: ATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAG GTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGGEST: gi|30705910|gb|CD058965.1|CD058965
genomic: ATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAGgtacagtttc ... atatttccagGTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGG
EST: ATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAG GTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGGEST: gi|50336894|gb|CO532020.1|CO532020
genomic: ATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAGgtacagtttc ... atatttccagGTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGG
EST: ATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAG GTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGGEST: gi|30705290|gb|CD058734.1|CD058734
genomic: ATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAGgtacagtttc ... atatttccagGTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGG
EST: ATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAG GTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGGEST: gi|27521943|gb|CA989049.1|CA989049
genomic: ATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAGgtacagtttc ... atatttccagGTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGG
EST: TTGGAAGCGAAGGTTGTCAAAGATTTTGACAAG GTTGAGATGATCCTTCAAGCTCTGGAGTATGAAAAGGEST: gi|29130952|gb|CB381656.1|CB381656
genomic: TTGGAAGCGAAGGTTGTCAAAGATTTTGACAAGgtacagtttc ... atatttccagGTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGG
EST: GAAGCGAAGGTTGTCAAAGATTTTGACAAG GTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGG
genomic: GAAGCGAAGGTTGTCAAAGATTTTGACAAGgtacagtttc ... atatttccagGTTGAGATGATACTTCAAGCTCTGGAGTATGAAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAAGAAATTCGTGAACTTTGGATGGAGTATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAGgtacagtttcatatttcaatccatcaagttggtggcatgattgcaacgtctgtctgaagctatcagatggtagttcttgtgatcattcaataggcaatgc
- - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG