1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aggatgttctctgtacaggcgagactaaagagttcatgtgatctttgacatggtatatataataaatacttgcctttatctgcatgctgttgtcttgcagCACAAGAAATTCGTGAACTTTGGATGGAGTATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAG
species | Zea mays |
transcript | GRMZM2G081144_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGGACCATATGTGCGAGCTGCTTGGTGGTGGTTCAAGAG CACAAGAAATTCGTGAACTTTGGATGGAGTATGAGGAGAATGCGTCTTTGGEST: gi|30705290|gb|CD058734.1|CD058734
genomic: ATTGGACCATATGTGCGAGCTGCTTGGTGGTGGTTCAAGAGgtgaatactg ... tgtcttgcagCACAAGAAATTCGTGAACTTTGGATGGAGTATGAGGAGAATGCGTCTTTGG
EST: GAAAGAAGCATTGGACCATATGTGCGAGCTGCTTGGTGGTGGTTCAAGAG CACAAGAAATTCGTGAACTTTGGATGGAGTATGAGGAGAATGCGTCTTTGG
genomic: GAAAGAAGCATTGGACCATATGTGCGAGCTGCTTGGTGGTGGTTCAAGAGgtgaatactg ... tgtcttgcagCACAAGAAATTCGTGAACTTTGGATGGAGTATGAGGAGAATGCGTCTTTGG
tgacatggtatatataataaatacttgcctttatctgcatgctgttgtcttgcagCACAAGAAATTCGTGAACTTTGGATGGAGTATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAG
ctttgac putative branch site (score: 222)
ttgtctt putative PPT
tggtatatataataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggatgttctctgtacaggcgagactaaagagttcatgtgatctttgacatggtatatataataaatacttgcctttatctgcatgctgttgtcttgcagCACAAGAAATTCGTGAACTTTGGATGGAGTATGAGGAGAATGCGTCTTTGGAAGCGAAGGTTGTCAAAGATTTTGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - ctgtaca
- - - - - - - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - - - - - - - - - -tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc