1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgatcctgacagtttcgctctcaagtctagctcggcagtatttagccttcttacggttccgttttcatacactgtttatttatcccttcaattacagGTGTGTCAAGATGGCGATTGTGCACGACATTGCAGAAG
species | Zea mays |
transcript | GRMZM2G081144_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCGTCATGGCGCTCGTCGCGGCCGATCTACCCGGCGTCAACCGCGACAG GTGTGTCAAGATGGCGATTGTGCACGACATTGCAGAAGEST: gi|30705290|gb|CD058734.1|CD058734
genomic: GGCGTCATGGCGCTCGTCGCGGCCGATCTACCCGGCGTCAACCGCGACAGgtgatcctga ... tcaattacagGTGTGTCAAGATGGCGATTGTGCACGACATTGCAGAAG
EST: GCGTCATGGCGCTCGTCGCGGCCGATCTACCCCGGCGTCAACCGCGACAG GTGTGTCAAGATGGCGATTGTGCACGACATTGCAGAAG
genomic: GCGTCATGGCGCTCGTCGCGGCCGATCTA-CCCGGCGTCAACCGCGACAGgtgatcctga ... tcaattacagGTGTGTCAAGATGGCGATTGTGCACGACATTGCAGAAG
tagccttcttacggttccgttttcatacactgtttatttatcccttcaattacagGTGTGTCAAGATGGCGATTGTGCACGACATTGCAGAAG
ttcttac putative branch site (score: 74)
tttatttatcccttc putative PPT
tgtttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcctgacagtttcgctctcaagtctagctcggcagtatttagccttcttacggttccgttttcatacactgtttatttatcccttcaattacagGTGTGTCAAGATGGCGATTGTGCACGACATTGCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG